RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 LHX1P48742 406 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 FAM171BQ6P995 826 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 VSTM1Q6UX27 236 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 C4orf50Q6ZRC1 276 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 GLRX5Q86SX6 157 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 GPBP1Q86WP2 473 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 CCDC83Q8IWF9 413 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 SCN4BQ8IWT1 228 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 PGBD3Q8N328 593 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 PHTF2Q8N3S3 785 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 TOP6BLQ8N6T0 577 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 PLIN2Q99541 437 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 TTLL2Q9BWV7 592 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 ARHGEF4Q9NR80 690 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 EHD2Q9NZN4 543 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 TRPM5Q9NZQ8 1165 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 ADH5P11766 374 aa15.24■□□□□ 0.03
PRPF40A-211ENST00000493468 POLR2BP30876 1174 aaKnown RBP15.24■□□□□ 0.03
PRPF40A-211ENST00000493468 EMC10Q5UCC4 262 aa15.24■□□□□ 0.03
PRPF40A-211ENST00000493468 RHBDF2Q6PJF5 856 aa15.24■□□□□ 0.03
PRPF40A-211ENST00000493468 OSTM1Q86WC4 334 aa15.24■□□□□ 0.03
PRPF40A-211ENST00000493468 C12orf40Q86WS4 652 aa15.24■□□□□ 0.03
PRPF40A-211ENST00000493468 DDX42Q86XP3 938 aaKnown RBP eCLIP15.24■□□□□ 0.03
PRPF40A-211ENST00000493468 NAXDQ8IW45 347 aa15.24■□□□□ 0.03
PRPF40A-211ENST00000493468 C1orf127Q8N9H9 656 aa15.24■□□□□ 0.03
PRPF40A-211ENST00000493468 FAM184AQ8NB25 1140 aa15.24■□□□□ 0.03
PRPF40A-211ENST00000493468 BBC3Q96PG8 261 aaPredicted RBP15.24■□□□□ 0.03
PRPF40A-211ENST00000493468 LIMCH1Q9UPQ0 1083 aa15.24■□□□□ 0.03
PRPF40A-211ENST00000493468 APOBEC2Q9Y235 224 aaKnown RBP15.24■□□□□ 0.03
PRPF40A-211ENST00000493468 PCDHB9Q9Y5E1 797 aa15.24■□□□□ 0.03
PRPF40A-211ENST00000493468 URB1O60287 2271 aaKnown RBP15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 IGHV1OR15-9A0A0B4J2B8 117 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 ZNF840PA6NDX5 716 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 TISP43B9A030 160 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 SH3BP5O60239 455 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 ZNF217O75362 1048 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 OAS1P00973 400 aaKnown RBP15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 ITGB3P05106 788 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 GABRG2P18507 467 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 POSTNQ15063 836 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 CCDC142Q17RM4 750 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 PREPLQ4J6C6 727 aaPredicted RBP15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 ARL6IP4Q66PJ3 421 aaKnown RBP15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 DENND5BQ6ZUT9 1274 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 SLC41A1Q8IVJ1 513 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 ADGRF2Q8IZF7 708 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 OR2I1PQ8NGU4 316 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 CXorf38Q8TB03 319 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 HVCN1Q96D96 273 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 OTUB2Q96DC9 234 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 FAM124BQ9H5Z6 455 aaPredicted RBP15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 CALCOCO1Q9P1Z2 691 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 TBC1D14Q9P2M4 693 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 SUSD2Q9UGT4 822 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 ITGA11Q9UKX5 1188 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 AGAP1Q9UPQ3 857 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 CPQQ9Y646 472 aa15.23■□□□□ 0.03
PRPF40A-211ENST00000493468 VWA3AA6NCI4 1184 aa15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 TBCAO75347 108 aaKnown RBP15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 NOP14P78316 857 aaKnown RBP15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 KDSRQ06136 332 aa15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 MAPRE1Q15691 268 aaKnown RBP15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 RILPL1Q5EBL4 403 aa15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 DPH6Q7L8W6 267 aa15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 LIMS2Q7Z4I7 341 aa15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 BRSK2Q8IWQ3 736 aa15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 ETFBKMTQ8IXQ9 262 aa15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 ZNF513Q8N8E2 541 aaPredicted RBP15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 GLIS3Q8NEA6 775 aa15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 CACTINQ8WUQ7 758 aaKnown RBP15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 POMGNT1Q8WZA1 660 aa15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 AK8Q96MA6 479 aa15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 CAMK1GQ96NX5 476 aa15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 DUSP9Q99956 384 aaKnown RBP15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 ZDHHC5Q9C0B5 715 aa15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 RNF38Q9H0F5 515 aa15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 CACNA2D2Q9NY47 1150 aa15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 KIAA1522Q9P206 1035 aaPredicted RBP15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 MAGEC2Q9UBF1 373 aaPredicted RBP15.22■□□□□ 0.03
PRPF40A-211ENST00000493468 E2F8A0AVK6 867 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 EIF4E1BA6NMX2 242 aaKnown RBP15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 TRIM66O15016 1216 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 HOXC11O43248 304 aaPredicted RBP15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 CBFA2T3O75081 653 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 ANXA13P27216 316 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 ADSSP30520 456 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 USP46P62068 366 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 TFAMQ00059 246 aaKnown RBP15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 GAD2Q05329 585 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 SOWAHAQ2M3V2 549 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 TOGARAM2Q6ZUX3 1019 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 MDM1Q8TC05 714 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 MYLPFQ96A32 169 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 ZNF419Q96HQ0 510 aaPredicted RBP15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 HSPA12BQ96MM6 686 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 CD248Q9HCU0 757 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 ZDHHC4Q9NPG8 344 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 BLOC1S4Q9NUP1 217 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 CFAP97Q9P2B7 532 aa15.21■□□□□ 0.03
PRPF40A-211ENST00000493468 CDH9Q9ULB4 789 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms