RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ZNF518BQ9C0D4 1074 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 EHD2Q9NZN4 543 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 TFIP11Q9UBB9 837 aaKnown RBP13.21□□□□□ -0.29
CPSF3-204ENST00000489403 NUP205Q92621 2012 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 ZFHX4Q86UP3 3567 aa13.21□□□□□ -0.3
CPSF3-204ENST00000489403 BCLAF3A2AJT9 711 aaKnown RBP13.2□□□□□ -0.3
CPSF3-204ENST00000489403 A8MXQ7 604 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 K7ELQ4 463 aaPredicted RBP13.2□□□□□ -0.3
CPSF3-204ENST00000489403 SCAMP3O14828 347 aaKnown RBP13.2□□□□□ -0.3
CPSF3-204ENST00000489403 CUTAO60888 179 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 YEATS4O95619 227 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 STAU1O95793 577 aaKnown RBP13.2□□□□□ -0.3
CPSF3-204ENST00000489403 ABL1P00519 1130 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 FAM163BP0C2L3 166 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 PTPN1P18031 435 aaKnown RBP13.2□□□□□ -0.3
CPSF3-204ENST00000489403 CASP1P29466 404 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 GBP1P32455 592 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 MYL6P60660 151 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 CREB5Q02930 508 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 IFRD2Q12894 506 aaPredicted RBP13.2□□□□□ -0.3
CPSF3-204ENST00000489403 TAF10Q12962 218 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 DHCR24Q15392 516 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 ST3GAL2Q16842 350 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 TDRD10Q5VZ19 366 aaKnown RBP13.2□□□□□ -0.3
CPSF3-204ENST00000489403 PMS2CLQ68D20 193 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 RNF43Q68DV7 783 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 C12orf40Q86WS4 652 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 SFTPA1Q8IWL2 248 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 ADGRG2Q8IZP9 1017 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 KIAA1958Q8N8K9 716 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 IQUBQ8NA54 791 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 B3GALNT2Q8NCR0 500 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 CCDC26Q8TAB7 109 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 EDEM2Q9BV94 578 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 B3GNT5Q9BYG0 378 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 ELOVL4Q9GZR5 314 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 XYLT2Q9H1B5 865 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 SMPD4Q9NXE4 827 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 MMP17Q9ULZ9 603 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 INVSQ9Y283 1065 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 THADAQ6YHU6 1953 aa13.2□□□□□ -0.3
CPSF3-204ENST00000489403 MYOFQ9NZM1 2061 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 CAVIN2O95810 425 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 CHRM1P11229 460 aaPredicted RBP13.19□□□□□ -0.3
CPSF3-204ENST00000489403 HNRNPLP14866 589 aaKnown RBP eCLIP13.19□□□□□ -0.32e-6■■□□□ 14.4
CPSF3-204ENST00000489403 BCKDHBP21953 392 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 SLC6A11P48066 632 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 SNRPFP62306 86 aaKnown RBP13.19□□□□□ -0.3
CPSF3-204ENST00000489403 MESP2Q0VG99 397 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 TRPC3Q13507 836 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 BMT2Q1RMZ1 405 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 ANO7Q6IWH7 933 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 C12orf56Q8IXR9 622 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 CCDC33Q8N5R6 958 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 MDGA1Q8NFP4 955 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 PLEKHO2Q8TD55 490 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 CNOT6LQ96LI5 555 aaKnown RBP13.19□□□□□ -0.3
CPSF3-204ENST00000489403 ZNF396Q96N95 335 aaPredicted RBP13.19□□□□□ -0.3
CPSF3-204ENST00000489403 SLITRK1Q96PX8 696 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 LSM14BQ9BX40 385 aaKnown RBP13.19□□□□□ -0.3
CPSF3-204ENST00000489403 BLZF1Q9H2G9 400 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 MAGEF1Q9HAY2 307 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 CFAP97Q9P2B7 532 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 NXF1Q9UBU9 619 aaKnown RBP13.19□□□□□ -0.3
CPSF3-204ENST00000489403 ANGPTL2Q9UKU9 493 aa13.19□□□□□ -0.3
CPSF3-204ENST00000489403 KMT2BQ9UMN6 2715 aaPredicted RBP13.19□□□□□ -0.3
CPSF3-204ENST00000489403 ABCA7Q8IZY2 2146 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 SLC9A3R1O14745 358 aaPredicted RBP13.18□□□□□ -0.3
CPSF3-204ENST00000489403 POLR2DO15514 142 aaKnown RBP13.18□□□□□ -0.3
CPSF3-204ENST00000489403 KCNK5O95279 499 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 MBL2P11226 248 aaPredicted RBP13.18□□□□□ -0.3
CPSF3-204ENST00000489403 ATICP31939 592 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 EIF2DP41214 584 aaKnown RBP13.18□□□□□ -0.3
CPSF3-204ENST00000489403 CASP4P49662 377 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 MRPS21P82921 87 aaKnown RBP13.18□□□□□ -0.3
CPSF3-204ENST00000489403 CRY1Q16526 586 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 USP39Q53GS9 565 aaKnown RBP13.18□□□□□ -0.3
CPSF3-204ENST00000489403 RHBDF2Q6PJF5 856 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 TMEM92Q6UXU6 159 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 FAM35AQ86V20 835 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 C11orf74Q86VG3 221 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 DDX42Q86XP3 938 aaKnown RBP eCLIP13.18□□□□□ -0.3
CPSF3-204ENST00000489403 NUP93Q8N1F7 819 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 FBXO32Q969P5 355 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 SYAP1Q96A49 352 aaPredicted RBP13.18□□□□□ -0.3
CPSF3-204ENST00000489403 CHAMP1Q96JM3 812 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 ZFRQ96KR1 1074 aaKnown RBP13.18□□□□□ -0.3
CPSF3-204ENST00000489403 SMYD3Q9H7B4 428 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 SLC39A2Q9NP94 309 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 TPRP12270 2363 aaKnown RBP13.18□□□□□ -0.3
CPSF3-204ENST00000489403 CACNA1BQ00975 2339 aa13.18□□□□□ -0.3
CPSF3-204ENST00000489403 LNP1A1A4G5 178 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 LRRIQ3A6PVS8 624 aaPredicted RBP13.17□□□□□ -0.3
CPSF3-204ENST00000489403 COCHO43405 550 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 PHACTR2O75167 634 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 RTN3O95197 1032 aaPredicted RBP13.17□□□□□ -0.3
CPSF3-204ENST00000489403 KAT7O95251 611 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 ADH5P11766 374 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 YWHAQP27348 245 aa13.17□□□□□ -0.3
CPSF3-204ENST00000489403 TIE1P35590 1138 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms