RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 TSPAN16Q9UKR8 245 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 YIPF1Q9Y548 306 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 ASB3Q9Y575 518 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 F8VP50 259 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 M0QYV0 167 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 CCL16O15467 120 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 RFPL2O75678 378 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 SOAT2O75908 522 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 MICAL2O94851 1124 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 VNN2O95498 520 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 CALCAP01258 141 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 GYPCP04921 128 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 CSH1P0DML2 217 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 CSH2P0DML3 217 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 NPR3P17342 541 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 TNFAIP3P21580 790 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 CDC25BP30305 580 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 SNX16P57768 344 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 CDR2Q01850 454 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 ITIH3Q06033 890 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 KLHL30Q0D2K2 578 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 BST2Q10589 180 aaKnown RBP10.88□□□□□ -0.67
SKA1-204ENST00000488454 CTC1Q2NKJ3 1217 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 ATAT1Q5SQI0 421 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 RARS2Q5T160 578 aaKnown RBP10.88□□□□□ -0.67
SKA1-204ENST00000488454 TMC5Q6UXY8 1006 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.88□□□□□ -0.67
SKA1-204ENST00000488454 CNGA4Q8IV77 575 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 TTC9BQ8N6N2 239 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 C12orf76Q8N812 135 aaPredicted RBP10.88□□□□□ -0.67
SKA1-204ENST00000488454 VN1R2Q8NFZ6 395 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 MAFAQ8NHW3 353 aaPredicted RBP10.88□□□□□ -0.67
SKA1-204ENST00000488454 UBA3Q8TBC4 463 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 SPATA17Q96L03 361 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 NOX5Q96PH1 765 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 KCNK16Q96T55 309 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 APOL5Q9BWW9 433 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 RHOBTB2Q9BYZ6 727 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 UBXN6Q9BZV1 441 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 CRISPLD1Q9H336 500 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 CSNK1G1Q9HCP0 422 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 ACP6Q9NPH0 428 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.88□□□□□ -0.67
SKA1-204ENST00000488454 COG5Q9UP83 839 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 BZW2Q9Y6E2 419 aaKnown RBP10.88□□□□□ -0.67
SKA1-204ENST00000488454 VWA8A3KMH1 1905 aa10.88□□□□□ -0.67
SKA1-204ENST00000488454 GLP2RO95838 553 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 SERPING1P05155 500 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 SETSIPP0DME0 302 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 PTPN2P17706 415 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 GPR15P49685 360 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 ADKP55263 362 aaKnown RBP10.87□□□□□ -0.67
SKA1-204ENST00000488454 PDE4CQ08493 712 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 MEA1Q16626 185 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 CYP4A22Q5TCH4 519 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 TAF3Q5VWG9 929 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 DENND1BQ6P3S1 775 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 DENND5BQ6ZUT9 1274 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 IRF2BP2Q7Z5L9 587 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 DNAJB7Q7Z6W7 309 aaPredicted RBP10.87□□□□□ -0.67
SKA1-204ENST00000488454 NOP9Q86U38 636 aaKnown RBP10.87□□□□□ -0.67
SKA1-204ENST00000488454 VPS36Q86VN1 386 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 NUP93Q8N1F7 819 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 SPC24Q8NBT2 197 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 TMEM35BQ8NCS4 154 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 CMASQ8NFW8 434 aaPredicted RBP10.87□□□□□ -0.67
SKA1-204ENST00000488454 GPR152Q8TDT2 470 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 SMG7Q92540 1137 aaKnown RBP10.87□□□□□ -0.67
SKA1-204ENST00000488454 SECISBP2LQ93073 1101 aaKnown RBP10.87□□□□□ -0.67
SKA1-204ENST00000488454 RIPOR3Q96MK2 946 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 SMOQ99835 787 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 AGPAT1Q99943 283 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 LHX5Q9H2C1 402 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 ADAM7Q9H2U9 754 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 LRRC4Q9HBW1 653 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 SEPT11Q9NVA2 429 aaKnown RBP10.87□□□□□ -0.67
SKA1-204ENST00000488454 CLEC1BQ9P126 229 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 IMPACTQ9P2X3 320 aa10.87□□□□□ -0.67
SKA1-204ENST00000488454 MAGED2Q9UNF1 606 aaPredicted RBP10.87□□□□□ -0.67
SKA1-204ENST00000488454 MYO7AQ13402 2215 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 COL4A4P53420 1690 aaPredicted RBP10.86□□□□□ -0.67
SKA1-204ENST00000488454 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.86□□□□□ -0.67
SKA1-204ENST00000488454 SLC38A8A6NNN8 435 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 ZNF197O14709 1029 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 XPO1O14980 1071 aaKnown RBP10.86□□□□□ -0.67
SKA1-204ENST00000488454 RTN3O95197 1032 aaPredicted RBP10.86□□□□□ -0.67
SKA1-204ENST00000488454 FGF19O95750 216 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 MMEP08473 750 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 POU2F2P09086 479 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 SKILP12757 684 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 ATF6P18850 670 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 KCNA5P22460 613 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 CACNA2D1P54289 1103 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 DLX2Q07687 328 aaPredicted RBP10.86□□□□□ -0.67
SKA1-204ENST00000488454 TBX2Q13207 712 aaPredicted RBP10.86□□□□□ -0.67
SKA1-204ENST00000488454 COL19A1Q14993 1142 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 PABPC1LQ4VXU2 614 aaKnown RBP10.86□□□□□ -0.67
SKA1-204ENST00000488454 TDRD12Q587J7 1177 aaKnown RBP10.86□□□□□ -0.67
SKA1-204ENST00000488454 PLA2G2CQ5R387 149 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 SDHAF4Q5VUM1 108 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms