RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 INPP4AQ96PE3 977 aaPredicted RBP11.47□□□□□ -0.57
HDAC6-228ENST00000486227 KLF6Q99612 283 aaPredicted RBP11.47□□□□□ -0.57
HDAC6-228ENST00000486227 SH3GL2Q99962 352 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 PAPOLBQ9NRJ5 636 aaKnown RBP11.47□□□□□ -0.57
HDAC6-228ENST00000486227 PLIN4Q96Q06 1357 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 ZC3H4Q9UPT8 1303 aaKnown RBP11.47□□□□□ -0.57
HDAC6-228ENST00000486227 M0QYT0 321 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 ACADSP16219 412 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 CLK2P49760 499 aaKnown RBP11.47□□□□□ -0.57
HDAC6-228ENST00000486227 PAPOLAP51003 745 aaKnown RBP11.47□□□□□ -0.57
HDAC6-228ENST00000486227 C1QBPQ07021 282 aaKnown RBP11.47□□□□□ -0.57
HDAC6-228ENST00000486227 SLC35G1Q2M3R5 365 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 DEFB128Q7Z7B8 93 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 SLC9A9Q8IVB4 645 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 CCNYL1Q8N7R7 359 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 DDIT4Q9NX09 232 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 CASZ1Q86V15 1759 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 ZNF541Q9H0D2 1346 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 CES2O00748 559 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 C2CD2LO14523 706 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 ONECUT3O60422 494 aaPredicted RBP11.46□□□□□ -0.57
HDAC6-228ENST00000486227 PEX10O60683 326 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 FKTNO75072 461 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 PYGMP11217 842 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 NDST1P52848 882 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 ST8SIA6P61647 398 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 PRAMEP78395 509 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 BMT2Q1RMZ1 405 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 TFDP3Q5H9I0 405 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 RASSF3Q86WH2 238 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 NLGN2Q8NFZ4 835 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 CEP70Q8NHQ1 597 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 RXFP2Q8WXD0 754 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 COL20A1Q9P218 1284 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 GJB6O95452 261 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 LRG1P02750 347 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 ATICP31939 592 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 PGM1P36871 562 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 OTUD4Q01804 1114 aaKnown RBP11.46□□□□□ -0.57
HDAC6-228ENST00000486227 FBXO47Q5MNV8 452 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 CCDC33Q8N5R6 958 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 SPDYE1Q8NFV5 336 aaPredicted RBP11.46□□□□□ -0.57
HDAC6-228ENST00000486227 FAM172AQ8WUF8 416 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 UBXN6Q9BZV1 441 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 ASB7Q9H672 318 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 RNF19AQ9NV58 838 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 PDP2Q9P2J9 529 aa11.46□□□□□ -0.57
HDAC6-228ENST00000486227 NFASCO94856 1347 aa11.46□□□□□ -0.58
HDAC6-228ENST00000486227 MYPNQ86TC9 1320 aa11.46□□□□□ -0.58
HDAC6-228ENST00000486227 C3orf70A6NLC5 250 aaPredicted RBP11.46□□□□□ -0.58
HDAC6-228ENST00000486227 SERPINB4P48594 390 aa11.46□□□□□ -0.58
HDAC6-228ENST00000486227 ADGRF2Q8IZF7 708 aa11.46□□□□□ -0.58
HDAC6-228ENST00000486227 EXD1Q8NHP7 514 aa11.46□□□□□ -0.58
HDAC6-228ENST00000486227 MAGEB5Q9BZ81 275 aa11.46□□□□□ -0.58
HDAC6-228ENST00000486227 TRPV6Q9H1D0 765 aa11.46□□□□□ -0.58
HDAC6-228ENST00000486227 ABI2Q9NYB9 513 aaPredicted RBP11.46□□□□□ -0.58
HDAC6-228ENST00000486227 MCM8Q9UJA3 840 aa11.46□□□□□ -0.58
HDAC6-228ENST00000486227 ARHGAP10A1A4S6 786 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 ODC1P11926 461 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 SLC12A1Q13621 1099 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 ZNF235Q14590 738 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 PDK1Q15118 436 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 FSCN1Q16658 493 aaKnown RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 JADE1Q6IE81 842 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 TRIM67Q6ZTA4 783 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 CNPY3Q9BT09 278 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 TSPYL2Q9H2G4 693 aaPredicted RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 PSMC3IPQ9P2W1 217 aaPredicted RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 PCDHGC5Q9Y5F6 944 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 SETD1AO15047 1707 aaKnown RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 KLRG2A4D1S0 409 aaPredicted RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 EPHB2P29323 1055 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 CAPSQ13938 189 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 FAM131BQ86XD5 332 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 PPIL6Q8IXY8 311 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 PIP4K2CQ8TBX8 421 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 DTX3LQ8TDB6 740 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 PABPC5Q96DU9 382 aaKnown RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 L3MBTL3Q96JM7 780 aaPredicted RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 LRGUKQ96M69 825 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 SERPINI1Q99574 410 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 EPS15L1Q9UBC2 864 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 BARX2Q9UMQ3 279 aaPredicted RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 SH3BP1Q9Y3L3 701 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 IGLV3-22A0A075B6J6 115 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 CFLARO15519 480 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 THP07101 528 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 BCAT1P54687 386 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 PTENP60484 403 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 ZNF200P98182 395 aaPredicted RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 ARHGAP15Q53QZ3 475 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 SLC27A1Q6PCB7 646 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 SPOCD1Q6ZMY3 1216 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 RNF135Q8IUD6 432 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 HASPINQ8TF76 798 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 SCG3Q8WXD2 468 aaKnown RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 TINF2Q9BSI4 451 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 TMEM121Q9BTD3 319 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 TMEM134Q9H6X4 195 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 TSPAN16Q9UKR8 245 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms