RNA–Protein interactions for RNA: ENST00000483922.1

UBR4-213, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 5

Gene UBR4, Length 543 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-213	ENST00000483922	KCNB1	Q14721	858 aa		13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	ACAP1	Q15027	740 aa		13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	POSTN	Q15063	836 aa		13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	LPCAT2	Q7L5N7	544 aa		13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	MIB1	Q86YT6	1006 aa		13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	ZFR	Q96KR1	1074 aa	Known RBP	13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	CAMK1G	Q96NX5	476 aa		13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	PNKP	Q96T60	521 aa		13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	MTMR12	Q9C0I1	747 aa		13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	CAPN10	Q9HC96	672 aa		13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	CD248	Q9HCU0	757 aa		13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	SMPD4	Q9NXE4	827 aa		13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	RBAK	Q9NYW8	714 aa	Predicted RBP	13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	MAGEC2	Q9UBF1	373 aa	Predicted RBP	13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	CPQ	Q9Y646	472 aa		13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	GCN1	Q92616	2671 aa	Known RBP	13.78	□□□□□ -0.2
UBR4-213	ENST00000483922	CST3	P01034	146 aa	Predicted RBP	13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	KRT19	P08727	400 aa		13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	PDGFRB	P09619	1106 aa		13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	GJB2	P29033	226 aa		13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	LONP1	P36776	959 aa	Known RBP	13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	GRIK1	P39086	918 aa		13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	RBP5	P82980	135 aa		13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	L1TD1	Q5T7N2	865 aa	Known RBP	13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	DENND5B	Q6ZUT9	1274 aa		13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	SLC41A1	Q8IVJ1	513 aa		13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	FSIP1	Q8NA03	581 aa		13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	HMGB4	Q8WW32	186 aa		13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	PCED1B	Q96HM7	432 aa		13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	PCDH15	Q96QU1	1955 aa		13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	SYT15	Q9BQS2	421 aa		13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	MRPL45	Q9BRJ2	306 aa	Known RBP	13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	NUSAP1	Q9BXS6	441 aa	Known RBP	13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	TRPM5	Q9NZQ8	1165 aa		13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	ITGA11	Q9UKX5	1188 aa		13.77	□□□□□ -0.21
UBR4-213	ENST00000483922	TCRBV21S2A2	A0A5A6	115 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922		F8VP50	259 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	MAP3K13	O43283	966 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	GABRG2	P18507	467 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	PCSK1	P29120	753 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	ABCD1	P33897	745 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	TNFRSF4	P43489	277 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	PGF	P49763	221 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	KDSR	Q06136	332 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	TAF10	Q12962	218 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	SF3A1	Q15459	793 aa	Known RBP	13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	LYSMD4	Q5XG99	296 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	VSTM1	Q6UX27	236 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	DPH6	Q7L8W6	267 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	RAB44	Q7Z6P3	723 aa	Predicted RBP	13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	ETFBKMT	Q8IXQ9	262 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	NAT16	Q8N8M0	369 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	KRI1	Q8N9T8	703 aa	Known RBP	13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	GLIS3	Q8NEA6	775 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	CCDC26	Q8TAB7	109 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	MYCBPAP	Q8TBZ2	947 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	SPATA18	Q8TC71	538 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	WHAMM	Q8TF30	809 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	CACTIN	Q8WUQ7	758 aa	Known RBP	13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	HVCN1	Q96D96	273 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	MRPL44	Q9H9J2	332 aa	Known RBP	13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	CD93	Q9NPY3	652 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	INTS13	Q9NVM9	706 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	CFAP97	Q9P2B7	532 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	CDH9	Q9ULB4	789 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	SLC6A14	Q9UN76	642 aa		13.76	□□□□□ -0.21
UBR4-213	ENST00000483922	BPTF	Q12830	3046 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	PI4KA	P42356	2102 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	PLXND1	Q9Y4D7	1925 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922		A0A1W2PQF6	199 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	ALDH1A2	O94788	518 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	PFKL	P17858	780 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	GART	P22102	1010 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	WARS	P23381	471 aa	Known RBP	13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	HOXD13	P35453	343 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	EIF2D	P41214	584 aa	Known RBP	13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	GRIA2	P42262	883 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	NOP14	P78316	857 aa	Known RBP	13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	CYP27A1	Q02318	531 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	SOWAHC	Q53LP3	525 aa	Predicted RBP	13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	SPDYC	Q5MJ68	293 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	LY6G5C	Q5SRR4	150 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	KIAA1958	Q8N8K9	716 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	ERLEC1	Q96DZ1	483 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	HPDL	Q96IR7	371 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	TMX3	Q96JJ7	454 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	C8orf48	Q96LL4	319 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	ACCS	Q96QU6	501 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	ACOX2	Q99424	681 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	GTPBP2	Q9BX10	602 aa	Known RBP	13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	DPEP3	Q9H4B8	488 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	SLC32A1	Q9H598	525 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	POLM	Q9NP87	494 aa	Predicted RBP	13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	ARHGEF4	Q9NR80	690 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	CLIC4	Q9Y696	253 aa		13.75	□□□□□ -0.21
UBR4-213	ENST00000483922	SETX	Q7Z333	2677 aa	Known RBP	13.74	□□□□□ -0.21
UBR4-213	ENST00000483922		A0A087X0B3	334 aa		13.74	□□□□□ -0.21
UBR4-213	ENST00000483922	FRMD3	A2A2Y4	597 aa		13.74	□□□□□ -0.21
UBR4-213	ENST00000483922	CLDN5	O00501	218 aa		13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms