RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	POLR2B	P30876	1174 aa	Known RBP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	FLT3	P36888	993 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	CTSK	P43235	329 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	SLC18A1	P54219	525 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	GEMIN4	P57678	1058 aa	Known RBP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	RASGRF1	Q13972	1273 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	RCN2	Q14257	317 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	HLF	Q16534	295 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	INF2	Q27J81	1249 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	ZCWPW2	Q504Y3	356 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	FAM133B	Q5BKY9	247 aa	Known RBP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	ARSH	Q5FYA8	562 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	TNFAIP8L3	Q5GJ75	292 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	C6orf163	Q5TEZ5	329 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	ARHGEF18	Q6ZSZ5	1173 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	NLRP9	Q7RTR0	991 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	AACS	Q86V21	672 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	SPATA24	Q86W54	205 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	DDX42	Q86XP3	938 aa	Known RBP eCLIP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	VPS37D	Q86XT2	251 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	GSPT2	Q8IYD1	628 aa	Known RBP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	LRRC34	Q8IZ02	419 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	ZBED8	Q8IZ13	594 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	ZNF34	Q8IZ26	560 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	TTC39C	Q8N584	583 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	USP38	Q8NB14	1042 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	DEPTOR	Q8TB45	409 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	SCFD2	Q8WU76	684 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	NAT14	Q8WUY8	206 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	SCFD1	Q8WVM8	642 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	CASKIN2	Q8WXE0	1202 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	STMN2	Q93045	179 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	SGF29	Q96ES7	293 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	FAM227B	Q96M60	508 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	LRGUK	Q96M69	825 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	CHP1	Q99653	195 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	MYD88	Q99836	296 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	ISCA1	Q9BUE6	129 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	NOC4L	Q9BVI4	516 aa	Known RBP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	CDADC1	Q9BWV3	514 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	TRIM55	Q9BYV6	548 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	UNK	Q9C0B0	810 aa	Known RBP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	MTFR1L	Q9H019	292 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	CCDC68	Q9H2F9	335 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	TMEM60	Q9H2L4	133 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	PABPC3	Q9H361	631 aa	Known RBP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	MAGEF1	Q9HAY2	307 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	PALMD	Q9NP74	551 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	RBM12	Q9NTZ6	932 aa	Known RBP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	ZDHHC7	Q9NXF8	308 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	C9orf78	Q9NZ63	289 aa	Predicted RBP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	SRP68	Q9UHB9	627 aa	Known RBP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	ZNHIT2	Q9UHR6	403 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	NIP7	Q9Y221	180 aa	Known RBP eCLIP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	PCDHB2	Q9Y5E7	798 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	PCDHA13	Q9Y5I0	950 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	ARFGEF2	Q9Y6D5	1785 aa		4.98	□□□□□ -1.61
PTCD3-212	ENST00000477520	MROH7-TTC4	A0A0A0MT08	1334 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	UTY	O14607	1347 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	UMODL1	Q5DID0	1318 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	C4A	P0C0L4	1744 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	ANKRD36C	Q5JPF3	1778 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	BCOR	Q6W2J9	1755 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	SCN7A	Q01118	1682 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520		A0A0D9SFI3	127 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520		A0A0J9YVX5	310 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520		A0A1B0GVG6	124 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	SH3PXD2B	A1X283	911 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520		E9PBE3	544 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	C1QTNF3-AMACR	E9PGA6	284 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	GRM8	O00222	908 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	PSMA7	O14818	248 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	ZNF185	O15231	689 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	MAGEB2	O15479	319 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	POLR2D	O15514	142 aa	Known RBP	4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	CCDC22	O60826	627 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	CLASP2	O75122	1294 aa	Known RBP	4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	FKBP6	O75344	327 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	MTRF1	O75570	445 aa	Known RBP	4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	ESRRB	O95718	433 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	GAS8	O95995	478 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	PCCA	P05165	728 aa	Predicted RBP	4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	LYN	P07948	512 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	MMP10	P09238	476 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	FAM153B	P0C7A2	387 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	XBP1	P17861	261 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	MARCKS	P29966	332 aa	Predicted RBP	4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	MAGEA1	P43355	309 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	TUBA1B	P68363	451 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	SLC7A5	Q01650	507 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	ASPH	Q12797	758 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	STRN3	Q13033	797 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	HNRNPD	Q14103	355 aa	Known RBP	4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	GCKR	Q14397	625 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	RCN1	Q15293	331 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	TARBP2	Q15633	366 aa	Known RBP	4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	TRIM71	Q2Q1W2	868 aa	Known RBP	4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	FAM153C	Q494X1	144 aa		4.97	□□□□□ -1.61
PTCD3-212	ENST00000477520	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	4.97	□□□□□ -1.61

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