RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ANXA13P27216 316 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 GJA4P35212 333 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 CXCL12P48061 93 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 GCLMP48507 274 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 NDST1P52848 882 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 PDGFRLQ15198 375 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 CRYBG2Q8N1P7 616 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 C12orf29Q8N999 325 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 SPATA20Q8TB22 786 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 SMOQ99835 787 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 ECT2Q9H8V3 914 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 POLR3BQ9NW08 1133 aaPredicted RBP14.99□□□□□ -0.01
UPF3A-204ENST00000475218 TRPM5Q9NZQ8 1165 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 FRMD4BQ9Y2L6 1034 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 DNAH14Q0VDD8 3507 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 ANTXRLA6NF34 631 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 EGFP01133 1207 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 PIK3CAP42336 1068 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 SLC7A9P82251 487 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 FAM186BQ8IYM0 893 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 WHAMMQ8TF30 809 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 ATRIPQ8WXE1 791 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 TAF4BQ92750 862 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 SEMA4DQ92854 862 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 ZFRQ96KR1 1074 aaKnown RBP14.98□□□□□ -0.01
UPF3A-204ENST00000475218 FAM126AQ9BYI3 521 aaPredicted RBP14.98□□□□□ -0.01
UPF3A-204ENST00000475218 DUS2Q9NX74 493 aaKnown RBP14.98□□□□□ -0.01
UPF3A-204ENST00000475218 FAM92AA1XBS5 289 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 LEFTY2O00292 366 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 PRCPP42785 496 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 GALK1P51570 392 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 PMS1P54277 932 aaKnown RBP14.98□□□□□ -0.01
UPF3A-204ENST00000475218 ENPEPQ07075 957 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 INCA1Q0VD86 236 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 EDRF1Q3B7T1 1238 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 INTS8Q75QN2 995 aaKnown RBP14.98□□□□□ -0.01
UPF3A-204ENST00000475218 NUP93Q8N1F7 819 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 TTC16Q8NEE8 873 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 RUBCNQ92622 972 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 CSNK1G1Q9HCP0 422 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 KRT82Q9NSB4 513 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 SMG5Q9UPR3 1016 aaKnown RBP14.98□□□□□ -0.01
UPF3A-204ENST00000475218 LAMA1P25391 3075 aa14.98□□□□□ -0.01
UPF3A-204ENST00000475218 CHURC1-FNTBB4DL54 471 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 SCAMP3O14828 347 aaKnown RBP14.97□□□□□ -0.01
UPF3A-204ENST00000475218 HRO43593 1189 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 KIF20AO95235 890 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 PFKLP17858 780 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 TGM1P22735 817 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 PSMC2P35998 433 aaKnown RBP14.97□□□□□ -0.01
UPF3A-204ENST00000475218 FNTBP49356 437 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 SLC5A3P53794 718 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 IFRD2Q12894 506 aaPredicted RBP14.97□□□□□ -0.01
UPF3A-204ENST00000475218 SRSF5Q13243 272 aaKnown RBP14.97□□□□□ -0.01
UPF3A-204ENST00000475218 ADAM9Q13443 819 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 CC2D1AQ6P1N0 951 aaPredicted RBP14.97□□□□□ -0.01
UPF3A-204ENST00000475218 ZC3H3Q8IXZ2 948 aaKnown RBP14.97□□□□□ -0.01
UPF3A-204ENST00000475218 SYNPOQ8N3V7 929 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 SLC2A14Q8TDB8 520 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 CCDC47Q96A33 483 aaKnown RBP14.97□□□□□ -0.01
UPF3A-204ENST00000475218 TNIP3Q96KP6 325 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 FAM49BQ9NUQ9 324 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 SMPD4Q9NXE4 827 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 CPQQ9Y646 472 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 CEP250Q9BV73 2442 aa14.97□□□□□ -0.01
UPF3A-204ENST00000475218 EML5Q05BV3 1969 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 HHLA1C9JL84 531 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 ZDHHC11BP0C7U3 371 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 YWHAQP27348 245 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 PPP3CCP48454 512 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 COBLL1Q53SF7 1204 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 SNX30Q5VWJ9 437 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 GPRIN1Q7Z2K8 1008 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 UNC93AQ86WB7 457 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 KIAA2013Q8IYS2 634 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 ATP2A3Q93084 1043 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 WBP2Q969T9 261 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 SMARCD1Q96GM5 515 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 DMAP1Q9NPF5 467 aaPredicted RBP14.96□□□□□ -0.01
UPF3A-204ENST00000475218 CHORDC1Q9UHD1 332 aaPredicted RBP14.96□□□□□ -0.01
UPF3A-204ENST00000475218 PCDHA5Q9Y5H7 936 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 CACNA1AO00555 2505 aa14.96□□□□□ -0.01
UPF3A-204ENST00000475218 COCHO43405 550 aa14.96□□□□□ -0.02
UPF3A-204ENST00000475218 AP1G2O75843 785 aa14.96□□□□□ -0.02
UPF3A-204ENST00000475218 CHRM1P11229 460 aaPredicted RBP14.96□□□□□ -0.02
UPF3A-204ENST00000475218 OPRD1P41143 372 aa14.96□□□□□ -0.02
UPF3A-204ENST00000475218 IFNAR2P48551 515 aa14.96□□□□□ -0.02
UPF3A-204ENST00000475218 NUCB2P80303 420 aa14.96□□□□□ -0.02
UPF3A-204ENST00000475218 MESP2Q0VG99 397 aa14.96□□□□□ -0.02
UPF3A-204ENST00000475218 BECN1Q14457 450 aa14.96□□□□□ -0.02
UPF3A-204ENST00000475218 CPA6Q8N4T0 437 aa14.96□□□□□ -0.02
UPF3A-204ENST00000475218 MED10Q9BTT4 135 aa14.96□□□□□ -0.02
UPF3A-204ENST00000475218 MMRN2Q9H8L6 949 aa14.96□□□□□ -0.02
UPF3A-204ENST00000475218 TMEM8AQ9HCN3 771 aa14.96□□□□□ -0.02
UPF3A-204ENST00000475218 EHD2Q9NZN4 543 aa14.96□□□□□ -0.02
UPF3A-204ENST00000475218 GMIPQ9P107 970 aa14.96□□□□□ -0.02
UPF3A-204ENST00000475218 MYH10P35580 1976 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 MYOFQ9NZM1 2061 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 RNF40O75150 1001 aa14.95□□□□□ -0.02
UPF3A-204ENST00000475218 RTN3O95197 1032 aaPredicted RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms