RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 ATP8B3O60423 1300 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 SLC9A3R1O14745 358 aaPredicted RBP18.6■□□□□ 0.57
COL7A1-208ENST00000470076 AXIN1O15169 862 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 KLRC4O43908 158 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 RTN3O95197 1032 aaPredicted RBP18.6■□□□□ 0.57
COL7A1-208ENST00000470076 ABL1P00519 1130 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 OAS1P00973 400 aaKnown RBP18.6■□□□□ 0.57
COL7A1-208ENST00000470076 RAP1GAPP47736 663 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 CASP4P49662 377 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 CACNA2D1P54289 1103 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 DNM1Q05193 864 aaKnown RBP18.6■□□□□ 0.57
COL7A1-208ENST00000470076 TAF10Q12962 218 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 PSMD2Q13200 908 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 ZNF699Q32M78 642 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 ZNF667Q5HYK9 610 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 KBTBD6Q86V97 674 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 SLC9A9Q8IVB4 645 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 GRAMD1CQ8IYS0 662 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 NUP93Q8N1F7 819 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 PDZD8Q8NEN9 1154 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 PLEKHO2Q8TD55 490 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 ZC3H10Q96K80 434 aaKnown RBP18.6■□□□□ 0.57
COL7A1-208ENST00000470076 HHIPQ96QV1 700 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 B3GNT5Q9BYG0 378 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 RNF38Q9H0F5 515 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 EXOC1Q9NV70 894 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 TMEM30AQ9NV96 361 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 SERTAD1Q9UHV2 236 aa18.6■□□□□ 0.57
COL7A1-208ENST00000470076 CNOT1A5YKK6 2376 aaKnown RBP18.59■□□□□ 0.57
COL7A1-208ENST00000470076 LRRIQ3A6PVS8 624 aaPredicted RBP18.59■□□□□ 0.57
COL7A1-208ENST00000470076 CLDN5O00501 218 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 ACTN4O43707 911 aaKnown RBP18.59■□□□□ 0.57
COL7A1-208ENST00000470076 EPN2O95208 641 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 APBB3O95704 486 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 STK4Q13043 487 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 NCOA4Q13772 614 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 PKP1Q13835 747 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 DMC1Q14565 340 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 DDX42Q86XP3 938 aaKnown RBP eCLIP18.59■□□□□ 0.57
COL7A1-208ENST00000470076 KIAA0895Q8NCT3 520 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 OVCA2Q8WZ82 227 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 TNIP3Q96KP6 325 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 ARRDC1-AS1Q9H2J1 176 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 SMYD3Q9H7B4 428 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 POLR3BQ9NW08 1133 aaPredicted RBP18.59■□□□□ 0.57
COL7A1-208ENST00000470076 DMAC2Q9NW81 257 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 EBF1Q9UH73 591 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 CPQQ9Y646 472 aa18.59■□□□□ 0.57
COL7A1-208ENST00000470076 PDXKO00764 312 aa18.58■□□□□ 0.56
COL7A1-208ENST00000470076 CLSTN1O94985 981 aa18.58■□□□□ 0.56
COL7A1-208ENST00000470076 C4BPAP04003 597 aaKnown RBP18.58■□□□□ 0.56
COL7A1-208ENST00000470076 MYL1P05976 194 aa18.58■□□□□ 0.56
COL7A1-208ENST00000470076 ZNF806P0C7X5 589 aa18.58■□□□□ 0.56
COL7A1-208ENST00000470076 YWHAQP27348 245 aa18.58■□□□□ 0.56
COL7A1-208ENST00000470076 OPRD1P41143 372 aa18.58■□□□□ 0.56
COL7A1-208ENST00000470076 CDH8P55286 799 aa18.58■□□□□ 0.56
COL7A1-208ENST00000470076 IFRD2Q12894 506 aaPredicted RBP18.58■□□□□ 0.56
COL7A1-208ENST00000470076 FILIP1Q7Z7B0 1213 aa18.58■□□□□ 0.56
COL7A1-208ENST00000470076 ADGRG2Q8IZP9 1017 aa18.58■□□□□ 0.56
COL7A1-208ENST00000470076 PAGE5Q96GU1 130 aa18.58■□□□□ 0.56
COL7A1-208ENST00000470076 SMPD4Q9NXE4 827 aa18.58■□□□□ 0.56
COL7A1-208ENST00000470076 USP25Q9UHP3 1055 aa18.58■□□□□ 0.56
COL7A1-208ENST00000470076 PCDHGA5Q9Y5G8 931 aa18.58■□□□□ 0.56
COL7A1-208ENST00000470076 ACACBO00763 2458 aa18.58■□□□□ 0.56
COL7A1-208ENST00000470076 GDF9O60383 454 aa18.57■□□□□ 0.56
COL7A1-208ENST00000470076 CYP17A1P05093 508 aa18.57■□□□□ 0.56
COL7A1-208ENST00000470076 P4HA1P13674 534 aa18.57■□□□□ 0.56
COL7A1-208ENST00000470076 GAB4Q2WGN9 574 aa18.57■□□□□ 0.56
COL7A1-208ENST00000470076 KMT5BQ4FZB7 885 aa18.57■□□□□ 0.56
COL7A1-208ENST00000470076 FAM35AQ86V20 835 aa18.57■□□□□ 0.56
COL7A1-208ENST00000470076 C12orf50Q8NA57 414 aaPredicted RBP18.57■□□□□ 0.56
COL7A1-208ENST00000470076 USP33Q8TEY7 942 aa18.57■□□□□ 0.56
COL7A1-208ENST00000470076 FBXO32Q969P5 355 aa18.57■□□□□ 0.56
COL7A1-208ENST00000470076 MED10Q9BTT4 135 aa18.57■□□□□ 0.56
COL7A1-208ENST00000470076 KCTD10Q9H3F6 313 aa18.57■□□□□ 0.56
COL7A1-208ENST00000470076 DMAP1Q9NPF5 467 aaPredicted RBP18.57■□□□□ 0.56
COL7A1-208ENST00000470076 CFAP97Q9P2B7 532 aa18.57■□□□□ 0.56
COL7A1-208ENST00000470076 EPG5Q9HCE0 2579 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 K7EQS6 105 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 VNN1O95497 513 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 RPN1P04843 607 aaKnown RBP18.56■□□□□ 0.56
COL7A1-208ENST00000470076 MBL2P11226 248 aaPredicted RBP18.56■□□□□ 0.56
COL7A1-208ENST00000470076 CMA1P23946 247 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 EIF2DP41214 584 aaKnown RBP18.56■□□□□ 0.56
COL7A1-208ENST00000470076 LIMK1P53667 647 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 DHCR24Q15392 516 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 ELF2Q15723 593 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 SGSM1Q2NKQ1 1148 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 PLK5Q496M5 336 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 AASDHQ4L235 1098 aaPredicted RBP18.56■□□□□ 0.56
COL7A1-208ENST00000470076 SCARA5Q6ZMJ2 495 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 TSTD1Q8NFU3 115 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 TMC2Q8TDI7 906 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 DDX1Q92499 740 aaKnown RBP18.56■□□□□ 0.56
COL7A1-208ENST00000470076 TAF4BQ92750 862 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 SMARCD1Q96GM5 515 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 KCNK16Q96T55 309 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 COMMD8Q9NX08 183 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 IL37Q9NZH6 218 aa18.56■□□□□ 0.56
COL7A1-208ENST00000470076 TBC1D14Q9P2M4 693 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms