RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 TRIM49P0CI25 452 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 TRIM49CP0CI26 452 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 TDGF1P13385 188 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 YWHAQP27348 245 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 ASPAP45381 313 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 GCLMP48507 274 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 TAF10Q12962 218 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 COBLL1Q53SF7 1204 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 TSSK4Q6SA08 328 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 ACOT1Q86TX2 421 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 ENGASEQ8NFI3 743 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 RIN3Q8TB24 985 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 SH3RF2Q8TEC5 729 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 RUBCNQ92622 972 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 TIGD1Q96MW7 591 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 CYP3A43Q9HB55 503 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 TMEM8AQ9HCN3 771 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 RBM12Q9NTZ6 932 aaKnown RBP20.26■□□□□ 0.83
COL7A1-207ENST00000467985 TMEM30AQ9NV96 361 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 COMMD8Q9NX08 183 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 OTOL1A6NHN0 477 aaPredicted RBP20.25■□□□□ 0.83
COL7A1-207ENST00000467985 TRDMT1O14717 391 aaKnown RBP20.25■□□□□ 0.83
COL7A1-207ENST00000467985 ARSAP15289 507 aa20.25■□□□□ 0.83
COL7A1-207ENST00000467985 NDST1P52848 882 aa20.25■□□□□ 0.83
COL7A1-207ENST00000467985 SLC7A9P82251 487 aa20.25■□□□□ 0.83
COL7A1-207ENST00000467985 PPP3CAQ08209 521 aa20.25■□□□□ 0.83
COL7A1-207ENST00000467985 NR1H3Q13133 447 aa20.25■□□□□ 0.83
COL7A1-207ENST00000467985 TMEM196Q5HYL7 178 aa20.25■□□□□ 0.83
COL7A1-207ENST00000467985 ZNF658Q5TYW1 1059 aaPredicted RBP20.25■□□□□ 0.83
COL7A1-207ENST00000467985 SMYD4Q8IYR2 804 aaPredicted RBP20.25■□□□□ 0.83
COL7A1-207ENST00000467985 SUMF1Q8NBK3 374 aa20.25■□□□□ 0.83
COL7A1-207ENST00000467985 TTC16Q8NEE8 873 aa20.25■□□□□ 0.83
COL7A1-207ENST00000467985 TSG101Q99816 390 aa20.25■□□□□ 0.83
COL7A1-207ENST00000467985 ECT2Q9H8V3 914 aa20.25■□□□□ 0.83
COL7A1-207ENST00000467985 AP1G2O75843 785 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 OLFM2O95897 454 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 ABL1P00519 1130 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 EPB41P11171 864 aaKnown RBP20.24■□□□□ 0.83
COL7A1-207ENST00000467985 SATB1Q01826 763 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 INCA1Q0VD86 236 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 GAS6Q14393 721 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 WDR44Q5JSH3 913 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 KRT39Q6A163 491 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 SPOPLQ6IQ16 392 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 Q6ZS52 159 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 PAQR9Q6ZVX9 377 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 DDX42Q86XP3 938 aaKnown RBP eCLIP20.24■□□□□ 0.83
COL7A1-207ENST00000467985 FUKQ8N0W3 1084 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 SPATA20Q8TB22 786 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 TAS1R2Q8TE23 839 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 SMARCE1Q969G3 411 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 FBXO32Q969P5 355 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 ELMO3Q96BJ8 720 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 FAXDC2Q96IV6 333 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 KCNK16Q96T55 309 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 HINFPQ9BQA5 517 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 NIF3L1Q9GZT8 377 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 EPC1Q9H2F5 836 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 WNT6Q9Y6F9 365 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 GPR179Q6PRD1 2367 aa20.24■□□□□ 0.83
COL7A1-207ENST00000467985 LEFTY2O00292 366 aa20.23■□□□□ 0.83
COL7A1-207ENST00000467985 TNFRSF10BO14763 440 aa20.23■□□□□ 0.83
COL7A1-207ENST00000467985 ATG13O75143 517 aa20.23■□□□□ 0.83
COL7A1-207ENST00000467985 NFATC1O95644 943 aa20.23■□□□□ 0.83
COL7A1-207ENST00000467985 OAS1P00973 400 aaKnown RBP20.23■□□□□ 0.83
COL7A1-207ENST00000467985 DRD1P21728 446 aa20.23■□□□□ 0.83
COL7A1-207ENST00000467985 PRCPP42785 496 aa20.23■□□□□ 0.83
COL7A1-207ENST00000467985 IFRD2Q12894 506 aaPredicted RBP20.23■□□□□ 0.83
COL7A1-207ENST00000467985 EML3Q32P44 896 aa20.23■□□□□ 0.83
COL7A1-207ENST00000467985 ELOA2Q8IYF1 753 aaPredicted RBP20.23■□□□□ 0.83
COL7A1-207ENST00000467985 TTC39CQ8N584 583 aa20.23■□□□□ 0.83
COL7A1-207ENST00000467985 SLC2A14Q8TDB8 520 aa20.23■□□□□ 0.83
COL7A1-207ENST00000467985 P2RY13Q9BPV8 354 aa20.23■□□□□ 0.83
COL7A1-207ENST00000467985 NT5C1AQ9BXI3 368 aa20.23■□□□□ 0.83
COL7A1-207ENST00000467985 CSNK1G1Q9HCP0 422 aa20.23■□□□□ 0.83
COL7A1-207ENST00000467985 KRT82Q9NSB4 513 aa20.23■□□□□ 0.83
COL7A1-207ENST00000467985 IL37Q9NZH6 218 aa20.23■□□□□ 0.83
COL7A1-207ENST00000467985 SLC9A3R1O14745 358 aaPredicted RBP20.22■□□□□ 0.83
COL7A1-207ENST00000467985 SLC16A3O15427 465 aaKnown RBP20.22■□□□□ 0.83
COL7A1-207ENST00000467985 HOXA6P31267 233 aa20.22■□□□□ 0.83
COL7A1-207ENST00000467985 GJA4P35212 333 aa20.22■□□□□ 0.83
COL7A1-207ENST00000467985 SLC5A3P53794 718 aa20.22■□□□□ 0.83
COL7A1-207ENST00000467985 FKBP3Q00688 224 aaKnown RBP20.22■□□□□ 0.83
COL7A1-207ENST00000467985 FBXO43Q4G163 708 aa20.22■□□□□ 0.83
COL7A1-207ENST00000467985 SNX30Q5VWJ9 437 aa20.22■□□□□ 0.83
COL7A1-207ENST00000467985 SECISBP2LQ93073 1101 aaKnown RBP20.22■□□□□ 0.83
COL7A1-207ENST00000467985 RNF38Q9H0F5 515 aa20.22■□□□□ 0.83
COL7A1-207ENST00000467985 FBXO44Q9H4M3 255 aa20.22■□□□□ 0.83
COL7A1-207ENST00000467985 MMRN2Q9H8L6 949 aa20.22■□□□□ 0.83
COL7A1-207ENST00000467985 HMGXB4Q9UGU5 601 aa20.22■□□□□ 0.83
COL7A1-207ENST00000467985 PCDHA5Q9Y5H7 936 aa20.22■□□□□ 0.83
COL7A1-207ENST00000467985 FAM92AA1XBS5 289 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 FAM200BP0CF97 657 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 CCDC130P13994 396 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 MXI1P50539 228 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 TUBP50607 506 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 LRRC63Q05C16 580 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 ORC1Q13415 861 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 STIM1Q13586 685 aa20.21■□□□□ 0.83
COL7A1-207ENST00000467985 HECTD3Q5T447 861 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms