RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 TAGAPQ8N103 731 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 USP6NLQ92738 828 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 FAM162AQ96A26 154 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 GMCL1Q96IK5 515 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 RPL26L1Q9UNX3 145 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 RPS6KL1Q9Y6S9 549 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 ZNF263O14978 683 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 TOMM70O94826 608 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 TGM2P21980 687 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 PAX7P23759 505 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 HNRNPH3P31942 346 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 NAMPTP43490 491 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 DRG2P55039 364 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 SV2CQ496J9 727 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 GMCL1P1Q8NEA9 526 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 NDUFS3O75489 264 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 ICAM1P05362 532 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 RARAP10276 462 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 FCGR1AP12314 374 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 AFG1LQ8WV93 481 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 HPDLQ96IR7 371 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 CNPY3Q9BT09 278 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 V9GYQ6 96 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 FCHO1O14526 889 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 OGTO15294 1046 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 VCAM1P19320 739 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 RAD51Q06609 339 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 KRR1Q13601 381 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 SLC45A4Q5BKX6 768 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 NMD3Q96D46 503 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 TMEM121Q9BTD3 319 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 TMEM106CQ9BVX2 250 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 RNPEPL1Q9HAU8 725 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 HACL1Q9UJ83 578 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 TPST1O60507 370 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 NUDT17P0C025 328 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 FAM58BPP0C7Q3 252 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 ABRAQ8N0Z2 381 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 EFHBQ8N7U6 833 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 DDX50Q9BQ39 737 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 PYGMP11217 842 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 PRKAA2P54646 552 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 SNAPC2Q13487 334 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 ZCCHC9Q8N567 271 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 UBA3Q8TBC4 463 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 SPATA17Q96L03 361 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 PARK7Q99497 189 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 NPTX2P47972 431 aa19.66■□□□□ 0.74
CCDC88B-204ENST00000463837 SERPINB5P36952 375 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 PEX5P50542 639 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 CDK16Q00536 496 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 ZFP1Q6P2D0 407 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 NUDT18Q6ZVK8 323 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 UNC45BQ8IWX7 931 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 PAWRQ96IZ0 340 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 KATNAL1Q9BW62 490 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 UBE2OQ9C0C9 1292 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 ELP3Q9H9T3 547 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 BLOC1S4Q9NUP1 217 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 PCYOX1Q9UHG3 505 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 SUPT3HB4E1H0 165 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 CLASP2O75122 1294 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 BMP6P22004 513 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 PNPLA4P41247 253 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 TRIM60Q495X7 471 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 ZNF398Q8TD17 642 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 THAP1Q9NVV9 213 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 TJP2Q9UDY2 1190 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 VPS9D1Q9Y2B5 631 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 ARHGEF28Q8N1W1 1705 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 MROH1Q8NDA8 1641 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 CPA3P15088 417 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 GCNT1Q02742 428 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 TBL3Q12788 808 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 MRPL28Q13084 256 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 ZNF75CPQ92670 426 aaPredicted RBP19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 CATSPER2Q96P56 530 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 ZNF556Q9HAH1 456 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 MYO1GB0I1T2 1018 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 WDR47O94967 919 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 CLK1P49759 484 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 DDR1Q08345 913 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 WDR59Q6PJI9 974 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 C4orf19Q8IY42 314 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 TAS1R2Q8TE23 839 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 SLC16A10Q8TF71 515 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 ASIC4Q96FT7 647 aa19.65■□□□□ 0.74
CCDC88B-204ENST00000463837 RUNX1T1Q06455 604 aa19.64■□□□□ 0.74
CCDC88B-204ENST00000463837 CNGA2Q16280 664 aa19.64■□□□□ 0.74
CCDC88B-204ENST00000463837 ZNF280CQ8ND82 737 aa19.64■□□□□ 0.74
CCDC88B-204ENST00000463837 TCP10LQ8TDR4 215 aa19.64■□□□□ 0.74
CCDC88B-204ENST00000463837 OTUB1Q96FW1 271 aaPredicted RBP19.64■□□□□ 0.74
CCDC88B-204ENST00000463837 SERPINE1P05121 402 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 GYS1P13807 737 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 GEMP55040 296 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 KYQ8NBH2 561 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 OR6J1Q8NGC5 347 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 ZNF70Q9UC06 446 aaPredicted RBP19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms