RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 SYT15Q9BQS2 421 aa13.33□□□□□ -0.28
HDAC4-207ENST00000461113 ZCWPW1Q9H0M4 648 aa13.33□□□□□ -0.28
HDAC4-207ENST00000461113 NDST4Q9H3R1 872 aa13.33□□□□□ -0.28
HDAC4-207ENST00000461113 TSPY26PQ9H489 355 aa13.33□□□□□ -0.28
HDAC4-207ENST00000461113 SMYD3Q9H7B4 428 aa13.33□□□□□ -0.28
HDAC4-207ENST00000461113 DNMT3BQ9UBC3 853 aaKnown RBP13.33□□□□□ -0.28
HDAC4-207ENST00000461113 PCDHB5Q9Y5E4 795 aa13.33□□□□□ -0.28
HDAC4-207ENST00000461113 ATP8B3O60423 1300 aa13.33□□□□□ -0.28
HDAC4-207ENST00000461113 WDR27A2RRH5 827 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 GIPC1O14908 333 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 ADAM12O43184 909 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 ABLIM3O94929 683 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 TOP3BO95985 862 aaKnown RBP13.32□□□□□ -0.28
HDAC4-207ENST00000461113 HOXA9P31269 272 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 NOVA1P51513 510 aaKnown RBP13.32□□□□□ -0.28
HDAC4-207ENST00000461113 LRMPQ12912 555 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 VEPH1Q14D04 833 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 TAF12Q16514 161 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 EXOC3L4Q17RC7 722 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 POTEHQ6S545 545 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 IRF2BP1Q8IU81 584 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 TCEAL8Q8IYN2 117 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 SPEM1Q8N4L4 309 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 SLC7A14Q8TBB6 771 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 SPPL2BQ8TCT7 592 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 SEMA4DQ92854 862 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 ELSPBP1Q96BH3 223 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 PGLYRP2Q96PD5 576 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 MRPL45Q9BRJ2 306 aaKnown RBP13.32□□□□□ -0.28
HDAC4-207ENST00000461113 NT5C1AQ9BXI3 368 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 ADAM33Q9BZ11 813 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 SMOC1Q9H4F8 434 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 BRD9Q9H8M2 597 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 GCNT4Q9P109 453 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 HSFX1Q9UBD0 423 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 WASF3Q9UPY6 502 aa13.32□□□□□ -0.28
HDAC4-207ENST00000461113 MRPS23Q9Y3D9 190 aaKnown RBP13.32□□□□□ -0.28
HDAC4-207ENST00000461113 K7ESF4 209 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 TAF4O00268 1085 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 OR4Q2P0C623 313 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 CHRNB1P11230 501 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 CD58P19256 250 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 ACAT1P24752 427 aaKnown RBP13.31□□□□□ -0.28
HDAC4-207ENST00000461113 EPHB3P54753 998 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 CDH8P55286 799 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 CUL2Q13617 745 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 MGAT5BQ3V5L5 792 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 CDKAL1Q5VV42 579 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 SCARA3Q6AZY7 606 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 IQCEQ6IPM2 695 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 RNF19BQ6ZMZ0 732 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 ENOSF1Q7L5Y1 443 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 LIMS2Q7Z4I7 341 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 PPM1KQ8N3J5 372 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 OR10T2Q8NGX3 314 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 FAM200AQ8TCP9 573 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 KBTBD7Q8WVZ9 684 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 ZCCHC14Q8WYQ9 949 aaKnown RBP13.31□□□□□ -0.28
HDAC4-207ENST00000461113 PCMTD1Q96MG8 357 aaPredicted RBP13.31□□□□□ -0.28
HDAC4-207ENST00000461113 FUCA2Q9BTY2 467 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 INTS2Q9H0H0 1204 aaKnown RBP13.31□□□□□ -0.28
HDAC4-207ENST00000461113 VPS16Q9H269 839 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 ABI2Q9NYB9 513 aaPredicted RBP13.31□□□□□ -0.28
HDAC4-207ENST00000461113 TAB2Q9NYJ8 693 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 GDE1Q9NZC3 331 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 PIAS3Q9Y6X2 628 aa13.31□□□□□ -0.28
HDAC4-207ENST00000461113 MTMR11A4FU01 709 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 PTPN1P18031 435 aaKnown RBP13.3□□□□□ -0.28
HDAC4-207ENST00000461113 LMO2P25791 158 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 HOXC13P31276 330 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 ASPAP45381 313 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 RAP1GAPP47736 663 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 NDST1P52848 882 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 MFAP3P55082 362 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 RPL10AP62906 217 aaKnown RBP13.3□□□□□ -0.28
HDAC4-207ENST00000461113 CYP27A1Q02318 531 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 ZNF252P-AS1Q0IIN9 211 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 DUSP4Q13115 394 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 KRT31Q15323 416 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 SLC5A9Q2M3M2 681 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 RNF43Q68DV7 783 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 ITIH5Q86UX2 942 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 OSTM1Q86WC4 334 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 ATAD1Q8NBU5 361 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 B3GALNT2Q8NCR0 500 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 GATA6Q92908 595 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 TATDN2Q93075 761 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 FUBP3Q96I24 572 aaKnown RBP eCLIP13.3□□□□□ -0.281e-7■■■■■ 36.2
HDAC4-207ENST00000461113 ZNF512Q96ME7 567 aaPredicted RBP13.3□□□□□ -0.28
HDAC4-207ENST00000461113 SEPT5Q99719 369 aaPredicted RBP13.3□□□□□ -0.28
HDAC4-207ENST00000461113 CRACR2AQ9BSW2 395 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 MED10Q9BTT4 135 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 APOBEC3GQ9HC16 384 aaKnown RBP13.3□□□□□ -0.28
HDAC4-207ENST00000461113 CBX8Q9HC52 389 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 ABCB6Q9NP58 842 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 RBM12Q9NTZ6 932 aaKnown RBP13.3□□□□□ -0.28
HDAC4-207ENST00000461113 LIMA1Q9UHB6 759 aaKnown RBP13.3□□□□□ -0.28
HDAC4-207ENST00000461113 GTF3C4Q9UKN8 822 aa13.3□□□□□ -0.28
HDAC4-207ENST00000461113 PDCD11Q14690 1871 aaKnown RBP13.29□□□□□ -0.28
HDAC4-207ENST00000461113 EPN2O95208 641 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms