RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 PGK1P00558 417 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 CFHP08603 1231 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 ADORA2AP29274 412 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 PTGIRP43119 386 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 ARPP19P56211 112 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 ZNF280AP59817 542 aaPredicted RBP12.12□□□□□ -0.47
NPHP4-204ENST00000460696 KDSRQ06136 332 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 ITIH4Q14624 930 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 KYAT1Q16773 422 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 METTL23Q86XA0 190 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 RIOX2Q8IUF8 465 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 MTMR14Q8NCE2 650 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 NTPCRQ9BSD7 190 aaKnown RBP12.12□□□□□ -0.47
NPHP4-204ENST00000460696 SNTG2Q9NY99 539 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 GRHL1Q9NZI5 618 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 BFARQ9NZS9 450 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 COQ4Q9Y3A0 265 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 TRIOBPQ9H2D6 2365 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 PAPPAQ13219 1627 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 E5RJQ4 531 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 LIASO43766 372 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 PQBP1O60828 265 aaKnown RBP12.12□□□□□ -0.47
NPHP4-204ENST00000460696 CREB1P16220 341 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 MMP8P22894 467 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 ELK3P41970 407 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 ZNF484Q5JVG2 852 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 SAPCD2Q86UD0 394 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 PHF13Q86YI8 300 aaPredicted RBP12.12□□□□□ -0.47
NPHP4-204ENST00000460696 TNS4Q8IZW8 715 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 ARMC2Q8NEN0 867 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 JOSD2Q8TAC2 188 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 LMO3Q8TAP4 145 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 PIK3R5Q8WYR1 880 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 CDT1Q9H211 546 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 DHX33Q9H6R0 707 aaKnown RBP12.12□□□□□ -0.47
NPHP4-204ENST00000460696 GRIN2DO15399 1336 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 COL4A1P02462 1669 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 CALRP27797 417 aaKnown RBP12.11□□□□□ -0.47
NPHP4-204ENST00000460696 RGS2P41220 211 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 CPA2P48052 419 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 ASPHQ12797 758 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 PPIL2Q13356 520 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 SPDYCQ5MJ68 293 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 KDELC2Q7Z4H8 507 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 SCN4BQ8IWT1 228 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 ALKBH8Q96BT7 664 aaKnown RBP12.11□□□□□ -0.47
NPHP4-204ENST00000460696 KDM4CQ9H3R0 1056 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 MANSC1Q9H8J5 431 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 KIF9Q9HAQ2 790 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 PDGFCQ9NRA1 345 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 PIH1D1Q9NWS0 290 aaKnown RBP12.11□□□□□ -0.47
NPHP4-204ENST00000460696 SHOC2Q9UQ13 582 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 HES2Q9Y543 173 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 MROH7Q68CQ1 1323 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 SNRPAP09012 282 aaKnown RBP12.11□□□□□ -0.47
NPHP4-204ENST00000460696 ZFXP17010 805 aaPredicted RBP12.11□□□□□ -0.47
NPHP4-204ENST00000460696 SLC26A2P50443 739 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 RAD23BP54727 409 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 SLC39A4Q6P5W5 647 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 ZDHHC24Q6UX98 284 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 ZCCHC9Q8N567 271 aaKnown RBP12.11□□□□□ -0.47
NPHP4-204ENST00000460696 FAM161BQ96MY7 647 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 MROH8Q9H579 483 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 H3BRJ5 948 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 MOCS2O96007 188 aaPredicted RBP12.11□□□□□ -0.47
NPHP4-204ENST00000460696 HSPA1AP0DMV8 641 aaKnown RBP12.11□□□□□ -0.47
NPHP4-204ENST00000460696 HSPA1BP0DMV9 641 aaKnown RBP12.11□□□□□ -0.47
NPHP4-204ENST00000460696 AKAP5P24588 427 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 MMP13P45452 471 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 EPHB1P54762 984 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 SP2Q02086 613 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 BMPR2Q13873 1038 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 NPNTQ6UXI9 565 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 LONP2Q86WA8 852 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 MCUQ8NE86 351 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 CEP41Q9BYV8 373 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 FNDC3AQ9Y2H6 1198 aaKnown RBP12.11□□□□□ -0.47
NPHP4-204ENST00000460696 TELO2Q9Y4R8 837 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 DDX60Q8IY21 1712 aaKnown RBP12.11□□□□□ -0.47
NPHP4-204ENST00000460696 TMEM191CA6NGB0 347 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 TULP2O00295 520 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 SNX3O60493 162 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 KDELR1P24390 212 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 ADCYAP1R1P41586 468 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 MMRN1Q13201 1228 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 DGKDQ16760 1214 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 CELF3Q5SZQ8 465 aaKnown RBP12.11□□□□□ -0.47
NPHP4-204ENST00000460696 FAM182AQ5T1J6 154 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 MYPNQ86TC9 1320 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 KIAA0319LQ8IZA0 1049 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 RPTORQ8N122 1335 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 DTX3LQ8TDB6 740 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 BRI3BPQ8WY22 251 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 GLT1D1Q96MS3 346 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 TUBB6Q9BUF5 446 aa12.11□□□□□ -0.47
NPHP4-204ENST00000460696 BARX2Q9UMQ3 279 aaPredicted RBP12.11□□□□□ -0.47
NPHP4-204ENST00000460696 ZWINTO95229 277 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 HSPA4LO95757 839 aa12.1□□□□□ -0.47
NPHP4-204ENST00000460696 ENO1P06733 434 aaKnown RBP12.1□□□□□ -0.47
NPHP4-204ENST00000460696 SRGAP2BP0DMP2 458 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms