RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 RSPO4Q2I0M5 234 aaPredicted RBP24.22■■□□□ 1.47
PTPN4-207ENST00000460162 ZACNQ401N2 412 aa24.22■■□□□ 1.47
PTPN4-207ENST00000460162 FAM35AQ86V20 835 aa24.22■■□□□ 1.47
PTPN4-207ENST00000460162 PDZD8Q8NEN9 1154 aa24.22■■□□□ 1.47
PTPN4-207ENST00000460162 TMC2Q8TDI7 906 aa24.22■■□□□ 1.47
PTPN4-207ENST00000460162 CCDC47Q96A33 483 aaKnown RBP24.22■■□□□ 1.47
PTPN4-207ENST00000460162 PARD6AQ9NPB6 346 aa24.22■■□□□ 1.47
PTPN4-207ENST00000460162 SLC8A2Q9UPR5 921 aa24.22■■□□□ 1.47
PTPN4-207ENST00000460162 ZDHHC9Q9Y397 364 aa24.22■■□□□ 1.47
PTPN4-207ENST00000460162 SPAG17Q6Q759 2223 aa24.21■■□□□ 1.47
PTPN4-207ENST00000460162 LEFTY2O00292 366 aa24.21■■□□□ 1.47
PTPN4-207ENST00000460162 CLDN5O00501 218 aa24.21■■□□□ 1.47
PTPN4-207ENST00000460162 RTN3O95197 1032 aaPredicted RBP24.21■■□□□ 1.47
PTPN4-207ENST00000460162 VNN1O95497 513 aa24.21■■□□□ 1.47
PTPN4-207ENST00000460162 RAP1GAPP47736 663 aa24.21■■□□□ 1.47
PTPN4-207ENST00000460162 DLG4P78352 724 aa24.21■■□□□ 1.47
PTPN4-207ENST00000460162 TAF10Q12962 218 aa24.21■■□□□ 1.47
PTPN4-207ENST00000460162 NAIF1Q69YI7 327 aaPredicted RBP24.21■■□□□ 1.47
PTPN4-207ENST00000460162 SCARA5Q6ZMJ2 495 aa24.21■■□□□ 1.47
PTPN4-207ENST00000460162 NUP93Q8N1F7 819 aa24.21■■□□□ 1.47
PTPN4-207ENST00000460162 OVCA2Q8WZ82 227 aa24.21■■□□□ 1.47
PTPN4-207ENST00000460162 FBRSL1Q9HCM7 1045 aaKnown RBP24.21■■□□□ 1.47
PTPN4-207ENST00000460162 TRAF3IP3Q9Y228 551 aa24.21■■□□□ 1.47
PTPN4-207ENST00000460162 ATP6V1DQ9Y5K8 247 aa24.21■■□□□ 1.47
PTPN4-207ENST00000460162 ATG2BQ96BY7 2078 aa24.2■■□□□ 1.47
PTPN4-207ENST00000460162 EML5Q05BV3 1969 aa24.2■■□□□ 1.46
PTPN4-207ENST00000460162 MAPK13O15264 365 aa24.2■■□□□ 1.46
PTPN4-207ENST00000460162 CALUO43852 315 aaPredicted RBP24.2■■□□□ 1.46
PTPN4-207ENST00000460162 RHOBTB3O94955 611 aa24.2■■□□□ 1.46
PTPN4-207ENST00000460162 NDUFA8P51970 172 aa24.2■■□□□ 1.46
PTPN4-207ENST00000460162 ZXDBP98169 803 aa24.2■■□□□ 1.46
PTPN4-207ENST00000460162 SPEM2Q0P670 501 aa24.2■■□□□ 1.46
PTPN4-207ENST00000460162 SGSM1Q2NKQ1 1148 aa24.2■■□□□ 1.46
PTPN4-207ENST00000460162 CEP68Q76N32 757 aa24.2■■□□□ 1.46
PTPN4-207ENST00000460162 TAF4BQ92750 862 aa24.2■■□□□ 1.46
PTPN4-207ENST00000460162 ACDQ96AP0 544 aa24.2■■□□□ 1.46
PTPN4-207ENST00000460162 SMARCD1Q96GM5 515 aa24.2■■□□□ 1.46
PTPN4-207ENST00000460162 SCAND2PQ9GZW5 306 aaPredicted RBP24.2■■□□□ 1.46
PTPN4-207ENST00000460162 DMAP1Q9NPF5 467 aaPredicted RBP24.2■■□□□ 1.46
PTPN4-207ENST00000460162 FRMD4BQ9Y2L6 1034 aa24.2■■□□□ 1.46
PTPN4-207ENST00000460162 CPQQ9Y646 472 aa24.2■■□□□ 1.46
PTPN4-207ENST00000460162 RALGAPA1Q6GYQ0 2036 aa24.19■■□□□ 1.46
PTPN4-207ENST00000460162 IKBKBO14920 756 aa24.19■■□□□ 1.46
PTPN4-207ENST00000460162 CDH8P55286 799 aa24.19■■□□□ 1.46
PTPN4-207ENST00000460162 IFRD2Q12894 506 aaPredicted RBP24.19■■□□□ 1.46
PTPN4-207ENST00000460162 NFIL3Q16649 462 aa24.19■■□□□ 1.46
PTPN4-207ENST00000460162 CEP135Q66GS9 1140 aa24.19■■□□□ 1.46
PTPN4-207ENST00000460162 DDX42Q86XP3 938 aaKnown RBP eCLIP24.19■■□□□ 1.46
PTPN4-207ENST00000460162 CAMKK1Q8N5S9 505 aa24.19■■□□□ 1.46
PTPN4-207ENST00000460162 CCDC26Q8TAB7 109 aa24.19■■□□□ 1.46
PTPN4-207ENST00000460162 GAB3Q8WWW8 586 aa24.19■■□□□ 1.46
PTPN4-207ENST00000460162 CHAMP1Q96JM3 812 aa24.19■■□□□ 1.46
PTPN4-207ENST00000460162 SDCBP2Q9H190 292 aa24.19■■□□□ 1.46
PTPN4-207ENST00000460162 CDV3Q9UKY7 258 aaKnown RBP24.19■■□□□ 1.46
PTPN4-207ENST00000460162 A0A1W2PQ27 194 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 A0A1W2PQ64 194 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 A0A1W2PQD8 194 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 SLC9A3R1O14745 358 aaPredicted RBP24.18■■□□□ 1.46
PTPN4-207ENST00000460162 ABL1P00519 1130 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 PRR29P0C7W0 189 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 YWHAQP27348 245 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 HOXC13P31276 330 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 DPYDQ12882 1025 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 SV2AQ7L0J3 742 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 RPLP0P6Q8NHW5 317 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 EZH1Q92800 747 aaPredicted RBP24.18■■□□□ 1.46
PTPN4-207ENST00000460162 FBXO32Q969P5 355 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 MED10Q9BTT4 135 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 RNF38Q9H0F5 515 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 KRT82Q9NSB4 513 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 MYH10P35580 1976 aa24.18■■□□□ 1.46
PTPN4-207ENST00000460162 RPP40O75818 363 aaKnown RBP24.17■■□□□ 1.46
PTPN4-207ENST00000460162 AKAP3O75969 853 aa24.17■■□□□ 1.46
PTPN4-207ENST00000460162 ASS1P00966 412 aaKnown RBP24.17■■□□□ 1.46
PTPN4-207ENST00000460162 PIK3CAP42336 1068 aa24.17■■□□□ 1.46
PTPN4-207ENST00000460162 SLC5A3P53794 718 aa24.17■■□□□ 1.46
PTPN4-207ENST00000460162 SYT13Q7L8C5 426 aa24.17■■□□□ 1.46
PTPN4-207ENST00000460162 FILIP1Q7Z7B0 1213 aa24.17■■□□□ 1.46
PTPN4-207ENST00000460162 UNC93AQ86WB7 457 aa24.17■■□□□ 1.46
PTPN4-207ENST00000460162 FAM160A2Q8N612 972 aaPredicted RBP24.17■■□□□ 1.46
PTPN4-207ENST00000460162 KCNK16Q96T55 309 aa24.17■■□□□ 1.46
PTPN4-207ENST00000460162 LINC00597Q9H2U6 94 aa24.17■■□□□ 1.46
PTPN4-207ENST00000460162 SMPD4Q9NXE4 827 aa24.17■■□□□ 1.46
PTPN4-207ENST00000460162 FOXD2O60548 495 aaPredicted RBP24.16■■□□□ 1.46
PTPN4-207ENST00000460162 CYP17A1P05093 508 aa24.16■■□□□ 1.46
PTPN4-207ENST00000460162 MBL2P11226 248 aaPredicted RBP24.16■■□□□ 1.46
PTPN4-207ENST00000460162 NR2F2P24468 414 aa24.16■■□□□ 1.46
PTPN4-207ENST00000460162 OPRD1P41143 372 aa24.16■■□□□ 1.46
PTPN4-207ENST00000460162 ASPAP45381 313 aa24.16■■□□□ 1.46
PTPN4-207ENST00000460162 TUBP50607 506 aa24.16■■□□□ 1.46
PTPN4-207ENST00000460162 ENPEPQ07075 957 aa24.16■■□□□ 1.46
PTPN4-207ENST00000460162 CSRP2Q16527 193 aa24.16■■□□□ 1.46
PTPN4-207ENST00000460162 KRBA2Q6ZNG9 492 aa24.16■■□□□ 1.46
PTPN4-207ENST00000460162 PAQR9Q6ZVX9 377 aa24.16■■□□□ 1.46
PTPN4-207ENST00000460162 INTS8Q75QN2 995 aaKnown RBP24.16■■□□□ 1.46
PTPN4-207ENST00000460162 FUKQ8N0W3 1084 aa24.16■■□□□ 1.46
PTPN4-207ENST00000460162 IMPG2Q9BZV3 1241 aa24.16■■□□□ 1.46
PTPN4-207ENST00000460162 SEMA4GQ9NTN9 838 aa24.16■■□□□ 1.46
PTPN4-207ENST00000460162 COMMD8Q9NX08 183 aa24.16■■□□□ 1.46
PTPN4-207ENST00000460162 IL37Q9NZH6 218 aa24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms