RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 FAM209BQ5JX69 171 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 TEDDM1Q5T9Z0 273 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 FCRL6Q6DN72 434 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 KCTD20Q7Z5Y7 419 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 SPARTQ8N0X7 666 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 SMCR8Q8TEV9 937 aaPredicted RBP4.81□□□□□ -1.64
USP40-209ENST00000452724 ATRIPQ8WXE1 791 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 GJA10Q969M2 543 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 ALG8Q9BVK2 526 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 GBA2Q9HCG7 927 aaPredicted RBP4.81□□□□□ -1.64
USP40-209ENST00000452724 SLC52A1Q9NWF4 448 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 DNMT3BQ9UBC3 853 aaKnown RBP4.81□□□□□ -1.64
USP40-209ENST00000452724 ENTPD2Q9Y5L3 495 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 SLC16A3O15427 465 aaKnown RBP4.8□□□□□ -1.64
USP40-209ENST00000452724 NCK2O43639 380 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 RGS10O43665 173 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 TLR5O60602 858 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 SRGAP2O75044 1071 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 A1BGP04217 495 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 TPH1P17752 444 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 BTF3P20290 206 aaKnown RBP4.8□□□□□ -1.64
USP40-209ENST00000452724 FGFR2P21802 821 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 ADORA2AP29274 412 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 ITGA8P53708 1063 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 SP2Q02086 613 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 BRD3Q15059 726 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 PTCHD3Q3KNS1 767 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 CERCAMQ5T4B2 595 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 DEPDC1Q5TB30 811 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 PTF1AQ7RTS3 328 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 MAVSQ7Z434 540 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 PEG10Q86TG7 708 aaKnown RBP4.8□□□□□ -1.64
USP40-209ENST00000452724 FAM186BQ8IYM0 893 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 DNAJB14Q8TBM8 379 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 TMEM171Q8WVE6 324 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 OSCP1Q8WVF1 389 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 PBKQ96KB5 322 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 TIMP4Q99727 224 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 CERS4Q9HA82 394 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 CPNE5Q9HCH3 593 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 NLRC4Q9NPP4 1024 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 TRMT13Q9NUP7 481 aaKnown RBP4.8□□□□□ -1.64
USP40-209ENST00000452724 TBC1D23Q9NUY8 699 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 ASB6Q9NWX5 421 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 EHD3Q9NZN3 535 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 FNIP2Q9P278 1114 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 MYO1AQ9UBC5 1043 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 DKK3Q9UBP4 350 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 FRMD4BQ9Y2L6 1034 aa4.8□□□□□ -1.64
USP40-209ENST00000452724 LRRC3CA6NJW4 275 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 AQP7P3A6NL99 342 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 CLCA1A8K7I4 914 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 RBMXL2O75526 392 aaKnown RBP4.79□□□□□ -1.64
USP40-209ENST00000452724 PIAS2O75928 621 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 NR2F6P10588 404 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 ZFXP17010 805 aaPredicted RBP4.79□□□□□ -1.64
USP40-209ENST00000452724 MAPK10P53779 464 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 ATXN1P54253 815 aaKnown RBP4.79□□□□□ -1.64
USP40-209ENST00000452724 PMS2P11Q13670 270 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 ZNF750Q32MQ0 723 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 FAM153CQ494X1 144 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 ZNF618Q5T7W0 954 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 LRCH2Q5VUJ6 765 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 IZUMO3Q5VZ72 239 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 RRAGBQ5VZM2 374 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 PLAG1Q6DJT9 500 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 HIBCHQ6NVY1 386 aaPredicted RBP4.79□□□□□ -1.64
USP40-209ENST00000452724 BEND5Q7L4P6 421 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 ABRAQ8N0Z2 381 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 BRI3BPQ8WY22 251 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 GLG1Q92896 1179 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 RFKQ969G6 155 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 SARAFQ96BY9 339 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 SGCZQ96LD1 299 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 TRIM5Q9C035 493 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 FAM83DQ9H4H8 585 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 GLOD4Q9HC38 313 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 IL17RBQ9NRM6 502 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 GJB4Q9NTQ9 266 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 ARPP21Q9UBL0 812 aaPredicted RBP4.79□□□□□ -1.64
USP40-209ENST00000452724 DKK4Q9UBT3 224 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 SNX14Q9Y5W7 946 aa4.79□□□□□ -1.64
USP40-209ENST00000452724 COL11A2P13942 1736 aaPredicted RBP4.79□□□□□ -1.64
USP40-209ENST00000452724 A1L4Q6 167 aa4.78□□□□□ -1.64
USP40-209ENST00000452724 GCOM1H8Y6P7 765 aaPredicted RBP4.78□□□□□ -1.64
USP40-209ENST00000452724 INO80B-WBP1J3KQ70 363 aa4.78□□□□□ -1.64
USP40-209ENST00000452724 AREL1O15033 823 aa4.78□□□□□ -1.64
USP40-209ENST00000452724 CD3EAPO15446 510 aaKnown RBP4.78□□□□□ -1.64
USP40-209ENST00000452724 C1QL1O75973 258 aa4.78□□□□□ -1.64
USP40-209ENST00000452724 FGF18O76093 207 aa4.78□□□□□ -1.64
USP40-209ENST00000452724 URI1O94763 535 aaPredicted RBP4.78□□□□□ -1.64
USP40-209ENST00000452724 NXPH3O95157 252 aa4.78□□□□□ -1.64
USP40-209ENST00000452724 ERBB2P04626 1255 aa4.78□□□□□ -1.64
USP40-209ENST00000452724 IL6RP08887 468 aaPredicted RBP4.78□□□□□ -1.64
USP40-209ENST00000452724 HARSP12081 509 aaKnown RBP4.78□□□□□ -1.64
USP40-209ENST00000452724 WT1P19544 449 aaPredicted RBP4.78□□□□□ -1.64
USP40-209ENST00000452724 PRKAR1BP31321 381 aa4.78□□□□□ -1.64
USP40-209ENST00000452724 LIPAP38571 399 aa4.78□□□□□ -1.64
USP40-209ENST00000452724 CLCN2P51788 898 aa4.78□□□□□ -1.64
USP40-209ENST00000452724 BCAT1P54687 386 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms