RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 FAM160A2Q8N612 972 aaPredicted RBP7.53□□□□□ -1.2
VPS41-208ENST00000448833 ARL14EPQ8N8R7 260 aaPredicted RBP7.53□□□□□ -1.2
VPS41-208ENST00000448833 C12orf50Q8NA57 414 aaPredicted RBP7.53□□□□□ -1.2
VPS41-208ENST00000448833 B3GALNT2Q8NCR0 500 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 SH3RF2Q8TEC5 729 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 HPS3Q969F9 1004 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 MYLPFQ96A32 169 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 PCED1BQ96HM7 432 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 ZC3H10Q96K80 434 aaKnown RBP7.53□□□□□ -1.2
VPS41-208ENST00000448833 FGFBP2Q9BYJ0 223 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 SLC39A2Q9NP94 309 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 CRTAC1Q9NQ79 661 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 SEMA4GQ9NTN9 838 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 EXOC1Q9NV70 894 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 GCNT4Q9P109 453 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 NXF1Q9UBU9 619 aaKnown RBP7.53□□□□□ -1.2
VPS41-208ENST00000448833 EBF1Q9UH73 591 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 FRMD4BQ9Y2L6 1034 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 LAMA1P25391 3075 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 THADAQ6YHU6 1953 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 MYOFQ9NZM1 2061 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 CEP250Q9BV73 2442 aa7.52□□□□□ -1.2
VPS41-208ENST00000448833 E2F8A0AVK6 867 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 ZNF840PA6NDX5 716 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.52□□□□□ -1.21
VPS41-208ENST00000448833 F8VP50 259 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 SLC30A4O14863 429 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 AXIN1O15169 862 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 MAPK13O15264 365 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 CALUO43852 315 aaPredicted RBP7.52□□□□□ -1.21
VPS41-208ENST00000448833 RNF40O75150 1001 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 ALDH1A2O94788 518 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 APBB3O95704 486 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 ADH1CP00326 375 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 ZNF806P0C7X5 589 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 ARSAP15289 507 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 TGM1P22735 817 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 RPL13P26373 211 aaKnown RBP7.52□□□□□ -1.21
VPS41-208ENST00000448833 YWHAQP27348 245 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 AFMP43652 599 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 TUBP50607 506 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 CDR1P51861 262 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 LIMK1P53667 647 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 MYL6P60660 151 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 PSMC1P62191 440 aaKnown RBP7.52□□□□□ -1.21
VPS41-208ENST00000448833 MRPS21P82921 87 aaKnown RBP7.52□□□□□ -1.21
VPS41-208ENST00000448833 ENPEPQ07075 957 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 GOLGA8FQ08AF8 430 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 GOLGA8DPQ0D2H9 430 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 TAF10Q12962 218 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 NCOA4Q13772 614 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 BYSLQ13895 437 aaKnown RBP7.52□□□□□ -1.21
VPS41-208ENST00000448833 ZNF699Q32M78 642 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 USP39Q53GS9 565 aaKnown RBP7.52□□□□□ -1.21
VPS41-208ENST00000448833 SDHAF4Q5VUM1 108 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 BTBD8Q5XKL5 378 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 TRIM68Q6AZZ1 485 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 IL31Q6EBC2 164 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 PRR23CQ6ZRP0 262 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 UNC93AQ86WB7 457 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 OSTM1Q86WC4 334 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 ADGRG2Q8IZP9 1017 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 TTC39CQ8N584 583 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 CCDC150Q8NCX0 1101 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 GLIS3Q8NEA6 775 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 TTC16Q8NEE8 873 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 TMC2Q8TDI7 906 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 KCNV2Q8TDN2 545 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 PARD3BQ8TEW8 1205 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 SMARCD1Q96GM5 515 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 DUSP9Q99956 384 aaKnown RBP7.52□□□□□ -1.21
VPS41-208ENST00000448833 MED10Q9BTT4 135 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 IMPG2Q9BZV3 1241 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 SCAND2PQ9GZW5 306 aaPredicted RBP7.52□□□□□ -1.21
VPS41-208ENST00000448833 FBXO44Q9H4M3 255 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 CEP192Q8TEP8 1941 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 PTPRJQ12913 1337 aa7.52□□□□□ -1.21
VPS41-208ENST00000448833 MYO18AQ92614 2054 aaKnown RBP7.51□□□□□ -1.21
VPS41-208ENST00000448833 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.51□□□□□ -1.21
VPS41-208ENST00000448833 C2orf78A6NCI8 922 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 OTOL1A6NHN0 477 aaPredicted RBP7.51□□□□□ -1.21
VPS41-208ENST00000448833 LEFTY2O00292 366 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 ZBTB24O43167 697 aaPredicted RBP7.51□□□□□ -1.21
VPS41-208ENST00000448833 TADA3O75528 432 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 OLFM2O95897 454 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 OAS1P00973 400 aaKnown RBP7.51□□□□□ -1.21
VPS41-208ENST00000448833 EGFP01133 1207 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 APODP05090 189 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 DPP6P42658 865 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 TNFRSF4P43489 277 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 RAP1GAPP47736 663 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 DGKEP52429 567 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 KRT85P78386 507 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 CUL4BQ13620 913 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 DMC1Q14565 340 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 E2F5Q15329 346 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 LPAL2Q16609 132 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 HECTD3Q5T447 861 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 SNX30Q5VWJ9 437 aa7.51□□□□□ -1.21
VPS41-208ENST00000448833 TRMT11Q7Z4G4 463 aaKnown RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms