RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 SLC39A14Q15043 492 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 CFAP221Q4G0U5 840 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 TMEM196Q5HYL7 178 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 C6orf118Q5T5N4 469 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 LMBRD2Q68DH5 695 aaPredicted RBP8.3□□□□□ -1.08
VPS50-204ENST00000438395 TRIM68Q6AZZ1 485 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 FAM173BQ6P4H8 233 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 PRR23CQ6ZRP0 262 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 CACNA2D4Q7Z3S7 1137 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 STKLD1Q8NE28 680 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 GAB3Q8WWW8 586 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 DNAJC19Q96DA6 116 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 TRMT2BQ96GJ1 504 aaKnown RBP8.3□□□□□ -1.08
VPS50-204ENST00000438395 SYT15Q9BQS2 421 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 OCSTAMPQ9BR26 566 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 ARHGAP9Q9BRR9 750 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 TNMDQ9H2S6 317 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 SNX25Q9H3E2 840 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 CUEDC2Q9H467 287 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 TMLHEQ9NVH6 421 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 GDAP2Q9NXN4 497 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 MAGEC2Q9UBF1 373 aaPredicted RBP8.3□□□□□ -1.08
VPS50-204ENST00000438395 GTF3C4Q9UKN8 822 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 ATP8B3O60423 1300 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 TICRRQ7Z2Z1 1910 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 FANCMQ8IYD8 2048 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 CCDC163A0A0D9SF12 145 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 TRDMT1O14717 391 aaKnown RBP8.29□□□□□ -1.08
VPS50-204ENST00000438395 SLC30A4O14863 429 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 STX6O43752 255 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 PHACTR2O75167 634 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 AKAP3O75969 853 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 NOL4O94818 638 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 NFATC1O95644 943 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 APBB3O95704 486 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 TNNI1P19237 187 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 GRIK1P39086 918 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 PXNP49023 591 aaPredicted RBP8.29□□□□□ -1.08
VPS50-204ENST00000438395 CYP2J2P51589 502 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 PSMC1P62191 440 aaKnown RBP8.29□□□□□ -1.08
VPS50-204ENST00000438395 TRPC3Q13507 836 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 PPM1JQ5JR12 505 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 FAM26FQ5R3K3 315 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 FSTL4Q6MZW2 842 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 VSTM1Q6UX27 236 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 DPH6Q7L8W6 267 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 TMEM150AQ86TG1 271 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 WDR49Q8IV35 697 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 IQUBQ8NA54 791 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 SH3RF2Q8TEC5 729 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 MYLPFQ96A32 169 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 DHX58Q96C10 678 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 INTS4Q96HW7 963 aaKnown RBP8.29□□□□□ -1.08
VPS50-204ENST00000438395 LOXL4Q96JB6 756 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 USP28Q96RU2 1077 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 FAM83CQ9BQN1 747 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 STRA6Q9BX79 667 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 ECT2Q9H8V3 914 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 HPS4Q9NQG7 708 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 INTS13Q9NVM9 706 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 HSPBP1Q9NZL4 362 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 TRPM5Q9NZQ8 1165 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 CDH9Q9ULB4 789 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 WNT6Q9Y6F9 365 aa8.29□□□□□ -1.08
VPS50-204ENST00000438395 PDCD11Q14690 1871 aaKnown RBP8.29□□□□□ -1.08
VPS50-204ENST00000438395 FRMD3A2A2Y4 597 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 SLC9A3R1O14745 358 aaPredicted RBP8.28□□□□□ -1.08
VPS50-204ENST00000438395 SPTLC2O15270 562 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 EIF3DO15371 548 aaKnown RBP eCLIP8.28□□□□□ -1.08
VPS50-204ENST00000438395 ABL1P00519 1130 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 EGFP01133 1207 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 PDGFRBP09619 1106 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 HDCP19113 662 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 TRIM21P19474 475 aaKnown RBP8.28□□□□□ -1.08
VPS50-204ENST00000438395 BDNFP23560 247 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 GBP1P32455 592 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 USP4Q13107 963 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 BIRC3Q13489 604 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 SNRNP35Q16560 246 aaKnown RBP8.28□□□□□ -1.08
VPS50-204ENST00000438395 SOWAHAQ2M3V2 549 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 MDH1BQ5I0G3 518 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 DENND5BQ6ZUT9 1274 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 C11orf74Q86VG3 221 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 OSTM1Q86WC4 334 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 DDX42Q86XP3 938 aaKnown RBP eCLIP8.28□□□□□ -1.08
VPS50-204ENST00000438395 CBWD2Q8IUF1 395 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 CAMKK1Q8N5S9 505 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 ARL14EPQ8N8R7 260 aaPredicted RBP8.28□□□□□ -1.08
VPS50-204ENST00000438395 ZSWIM2Q8NEG5 633 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 TSTD1Q8NFU3 115 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 OR6B3Q8NGW1 331 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 RPLP0P6Q8NHW5 317 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 OSCP1Q8WVF1 389 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 CD101Q93033 1021 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 CCDC127Q96BQ5 260 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 FAM84AQ96KN4 292 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 MYRFLQ96LU7 910 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 CEP295NLQ96MC4 621 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 SLITRK1Q96PX8 696 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 HHIPQ96QV1 700 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms