RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ZNF333Q96JL9 665 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 C12orf66Q96MD2 445 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 DHX33Q9H6R0 707 aaKnown RBP7.43□□□□□ -1.22
VPS53-204ENST00000437048 IFRD1O00458 451 aaPredicted RBP7.43□□□□□ -1.22
VPS53-204ENST00000437048 CRABP2P29373 138 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 GSTT1P30711 240 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 AKAP14Q86UN6 197 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 RNFT2Q96EX2 444 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 SPATA5L1Q9BVQ7 753 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 COMMD9Q9P000 198 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 KIF20BQ96Q89 1820 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 METP08581 1390 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 MYH8P13535 1937 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 TRIM66O15016 1216 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 EYA4O95677 639 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 GCP02774 474 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 SERPINE1P05121 402 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 STXBP2Q15833 593 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 ZDHHC17Q8IUH5 632 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 CLHC1Q8NHS4 586 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 ACTRT2Q8TDY3 377 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 ZFAND2BQ8WV99 257 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 CATSPERBQ9H7T0 1116 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 PI4KBQ9UBF8 816 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 RAB26Q9ULW5 256 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 CYP2D7A0A087X1C5 515 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 EFCAB10A6NFE3 127 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 UQCRBP14927 111 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 GRK3P35626 688 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 NCALDP61601 193 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 CDH18Q13634 790 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 C16orf62Q7Z3J2 963 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 MIER2Q8N344 545 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 MDM1Q8TC05 714 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 CNKSR1Q969H4 720 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 REPS1Q96D71 796 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 WDR24Q96S15 920 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 VAT1Q99536 393 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 TRIM9Q9C026 710 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 RACGAP1Q9H0H5 632 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 PIH1D3Q9NQM4 214 aaKnown RBP7.43□□□□□ -1.22
VPS53-204ENST00000437048 ARHGEF38Q9NXL2 777 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 ZBTB5O15062 677 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 CCT3P49368 545 aaKnown RBP7.43□□□□□ -1.22
VPS53-204ENST00000437048 ARID5BQ14865 1188 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 CEP170P1Q96L14 293 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 MSTO1Q9BUK6 570 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 VTA1Q9NP79 307 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 BARHL2Q9NY43 387 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 HECW2Q9P2P5 1572 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 M0QX08 132 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 PNPLA4P41247 253 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 ZAP70P43403 619 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 LRRC74AQ0VAA2 488 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 EZH2Q15910 746 aaKnown RBP7.43□□□□□ -1.22
VPS53-204ENST00000437048 RNF219Q5W0B1 726 aaPredicted RBP7.43□□□□□ -1.22
VPS53-204ENST00000437048 ABI1Q8IZP0 508 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 SYNDIG1Q9H7V2 258 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 ITM2BQ9Y287 266 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.43□□□□□ -1.22
VPS53-204ENST00000437048 ATRXP46100 2492 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 TRAFD1O14545 582 aaPredicted RBP7.43□□□□□ -1.22
VPS53-204ENST00000437048 DHFRP00374 187 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 ATP1A3P13637 1013 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 EIF3EP60228 445 aaKnown RBP7.43□□□□□ -1.22
VPS53-204ENST00000437048 COX10Q12887 443 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 KCTD2Q14681 263 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 TFDP3Q5H9I0 405 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 UNC45BQ8IWX7 931 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 APOL2Q9BQE5 337 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 GPN3Q9UHW5 284 aaPredicted RBP7.43□□□□□ -1.22
VPS53-204ENST00000437048 TGDSO95455 350 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 NTRK1P04629 796 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 POLD2P49005 469 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 TIMM10P62072 90 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 ARHGAP17Q68EM7 881 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 HPS4Q9NQG7 708 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 ITSN1Q15811 1721 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 HAT1O14929 419 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 PTENP60484 403 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 TIGD7Q6NT04 549 aaPredicted RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 YTHDF1Q9BYJ9 559 aaKnown RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 PHTF1Q9UMS5 762 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 KDM6AO15550 1401 aaPredicted RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 UBA6A0AVT1 1052 aaPredicted RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 DGAT1O75907 488 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 ADSSP30520 456 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 IYDQ6PHW0 289 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 BTN2A1Q7KYR7 527 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 CENPIQ92674 756 aaPredicted RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 RCVRNP35243 200 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 NFX1Q12986 1120 aaKnown RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 FAR1Q8WVX9 515 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 THRSPQ92748 146 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 NGRNQ9NPE2 291 aaKnown RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 AHSPQ9NZD4 102 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 PRMT5O14744 637 aaPredicted RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 CASP4P49662 377 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 CDH4P55283 916 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms