RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 AGPAT5Q9NUQ2 364 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 GGT7Q9UJ14 662 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 SNX12Q9UMY4 172 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 NAPEPLDQ6IQ20 393 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 CPA4Q9UI42 421 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 ASXL3Q9C0F0 2248 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 SPAG6O75602 509 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 FGFR2P21802 821 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 COMTP21964 271 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 KPNA1P52294 538 aaPredicted RBP12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 ZMAT2Q96NC0 199 aaKnown RBP12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 PNKPQ96T60 521 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 A0A1B0GTH6 734 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 CBX4O00257 560 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 ZW10O43264 779 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 SBK1Q52WX2 424 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 SLFN11Q7Z7L1 901 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 PPIL6Q8IXY8 311 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 GRAMD1AQ96CP6 724 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 CHI3L2Q15782 390 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 CACUL1Q86Y37 369 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 USP18Q9UMW8 372 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 SOAT2O75908 522 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 CSTF3Q12996 717 aaKnown RBP12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 PREPLQ4J6C6 727 aaPredicted RBP12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 ZNF484Q5JVG2 852 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 FGD2Q7Z6J4 655 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 ZNF333Q96JL9 665 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 OSBPL8Q9BZF1 889 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 NT5MQ9NPB1 228 aa12.48□□□□□ -0.41
CCDC88A-207ENST00000436346 CFAP73A6NFT4 308 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 STX7O15400 261 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 SLC37A4O43826 429 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 ITGA8P53708 1063 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 MAP3K7CLP57077 242 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 EXOSC10Q01780 885 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 CCDC144BQ3MJ40 725 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 SPATA21Q7Z572 469 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 GALNT4Q8N4A0 578 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 CIPCQ9C0C6 399 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 SENP2Q9HC62 589 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 ANKEF1Q9NU02 776 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 USP42Q9H9J4 1324 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 CDH16O75309 829 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 NTSR2O95665 410 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 RAG1P15918 1043 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 CLCN3P51790 818 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 OXCT1P55809 520 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 CDR2LQ86X02 465 aaPredicted RBP12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 CLYBLQ8N0X4 340 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 TRIM10Q9UDY6 481 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 TBKBP1A7MCY6 615 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 KRT20P35900 424 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 IGFLR1Q9H665 355 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 UBR2Q8IWV8 1755 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 TDRD6O60522 2096 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 CAPN15O75808 1086 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 SERPINB8P50452 374 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 FMR1Q06787 632 aaKnown RBP eCLIP12.47□□□□□ -0.412e-8■□□□□ 10.2
CCDC88A-207ENST00000436346 AGAP9Q5VTM2 703 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 LRRC1Q9BTT6 524 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 TLR8Q9NR97 1041 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 hCG_2014768A0A024R1R8 64 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 PSMD12O00232 456 aaPredicted RBP12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 MSH4O15457 936 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 CST8O60676 142 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 SERPINB4P48594 390 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 AMPD2Q01433 879 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 NAB2Q15742 525 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 PTGISQ16647 500 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 RPS6KB2Q9UBS0 482 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 LNPEPQ9UIQ6 1025 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 RNF103O00237 685 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 VWA5AO00534 786 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 FAM107AO95990 144 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 RPLP2P05387 115 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 FDFT1P37268 417 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 SEZ6Q53EL9 994 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 FEZF2Q8TBJ5 459 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 RBBP8Q99708 897 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 TMEM245Q9H330 911 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 FBXO28Q9NVF7 368 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 CHORDC1Q9UHD1 332 aaPredicted RBP12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 PADI4Q9UM07 663 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 RPS6KL1Q9Y6S9 549 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 KLRC2P26717 231 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 LONP2Q86WA8 852 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 ERO1BQ86YB8 467 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 ECSITQ9BQ95 431 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 ALDH8A1Q9H2A2 487 aaPredicted RBP12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 FXR2P51116 673 aaKnown RBP eCLIP12.47□□□□□ -0.411e-7■■■□□ 17
CCDC88A-207ENST00000436346 ADIGQ0VDE8 80 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 KCTD17Q8N5Z5 321 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 GPRASP2Q96D09 838 aa12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 UBE2OQ9C0C9 1292 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-207ENST00000436346 AKAP11Q9UKA4 1901 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 TRPC5OSA6NMA1 111 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 RIT2Q99578 217 aa12.46□□□□□ -0.41
CCDC88A-207ENST00000436346 NWD2Q9ULI1 1742 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms