RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 NCANO14594 1321 aa19.73■□□□□ 0.75
SHH-203ENST00000435425 TRAV19A0A0A6YYK7 116 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 GPR37L1O60883 481 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 PAEPP09466 180 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 BRD2P25440 801 aaKnown RBP19.72■□□□□ 0.75
SHH-203ENST00000435425 KCNMA1Q12791 1236 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 NCAPHQ15003 741 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 YAF2Q8IY57 180 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 ARL14EPQ8N8R7 260 aaPredicted RBP19.72■□□□□ 0.75
SHH-203ENST00000435425 ANKRD20A12PQ8NF67 263 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 UBA3Q8TBC4 463 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 TFAP2BQ92481 460 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 PBXIP1Q96AQ6 731 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 ASIC4Q96FT7 647 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 SLC22A12Q96S37 553 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 TRMT61BQ9BVS5 477 aaKnown RBP19.72■□□□□ 0.75
SHH-203ENST00000435425 BRD9Q9H8M2 597 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 SIX2Q9NPC8 291 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 HESX1Q9UBX0 185 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 TSPAN16Q9UKR8 245 aa19.72■□□□□ 0.75
SHH-203ENST00000435425 TECTAO75443 2155 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 HHLA1C9JL84 531 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 PDGFBP01127 241 aaPredicted RBP19.71■□□□□ 0.75
SHH-203ENST00000435425 CKMP06732 381 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 PSMC3P17980 439 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 HDCP19113 662 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 GDI1P31150 447 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 COPB1P53618 953 aaKnown RBP19.71■□□□□ 0.75
SHH-203ENST00000435425 ENOSF1Q7L5Y1 443 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 TTC30AQ86WT1 665 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 MFSD6LQ8IWD5 586 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 ANKRD52Q8NB46 1076 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 E2F7Q96AV8 911 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 LRFN3Q9BTN0 628 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 FUCA2Q9BTY2 467 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 LSM14BQ9BX40 385 aaKnown RBP19.71■□□□□ 0.75
SHH-203ENST00000435425 COMMD8Q9NX08 183 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 GMIPQ9P107 970 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 ZMYM5Q9UJ78 669 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 DNAJC12Q9UKB3 198 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 AJAP1Q9UKB5 411 aaPredicted RBP19.71■□□□□ 0.75
SHH-203ENST00000435425 KIAA1257Q9ULG3 409 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 CCL26Q9Y258 94 aa19.71■□□□□ 0.75
SHH-203ENST00000435425 ZNF840PA6NDX5 716 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 USP17L7P0C7H9 530 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 PPP3CCP48454 512 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 ZNF165P49910 485 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 SLC8A3P57103 927 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 HFE2Q6ZVN8 426 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 SIX5Q8N196 739 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 CELF5Q8N6W0 485 aaKnown RBP19.7■□□□□ 0.74
SHH-203ENST00000435425 PDZD8Q8NEN9 1154 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 DEPDC1BQ8WUY9 529 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 USP13Q92995 863 aaPredicted RBP19.7■□□□□ 0.74
SHH-203ENST00000435425 FAM81BQ96LP2 452 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 LRRC3BQ96PB8 259 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 MFSD1Q9H3U5 465 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 FBXO44Q9H4M3 255 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 SLC2A4RGQ9NR83 387 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 TDP1Q9NUW8 608 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 HELZP42694 1942 aaKnown RBP19.7■□□□□ 0.74
SHH-203ENST00000435425 TICRRQ7Z2Z1 1910 aa19.7■□□□□ 0.74
SHH-203ENST00000435425 SMTNL1A8MU46 457 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 PRR33A8MZF0 331 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 TULP2O00295 520 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 O00370 1275 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 STK25O00506 426 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 ZNF263O14978 683 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 WEE1P30291 646 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 BCAT1P54687 386 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 PDE4CQ08493 712 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 ZSCAN23Q3MJ62 389 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 FKBP15Q5T1M5 1219 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 IER5LQ5T953 404 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 PIGZQ86VD9 579 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 DHX40Q8IX18 779 aaKnown RBP19.69■□□□□ 0.74
SHH-203ENST00000435425 BPIFB1Q8TDL5 484 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 ZFYVE19Q96K21 471 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 BPIFA3Q9BQP9 254 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 ZSWIM1Q9BR11 485 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 HSD3B7Q9H2F3 369 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 IL37Q9NZH6 218 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 WNT16Q9UBV4 365 aa19.69■□□□□ 0.74
SHH-203ENST00000435425 LIMA1Q9UHB6 759 aaKnown RBP19.69■□□□□ 0.74
SHH-203ENST00000435425 KRBA1A5PL33 1030 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 SOBPA7XYQ1 873 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 BECN2A8MW95 431 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 M0QYV0 167 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 CYP26A1O43174 497 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 ATP1A3P13637 1013 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 ZNF18P17022 549 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 RFX1P22670 979 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 KLK7P49862 253 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 ZNF132P52740 706 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 BST2Q10589 180 aaKnown RBP19.68■□□□□ 0.74
SHH-203ENST00000435425 RAPGEF1Q13905 1077 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 OVCA2Q8WZ82 227 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 PCMTD1Q96MG8 357 aaPredicted RBP19.68■□□□□ 0.74
SHH-203ENST00000435425 RNF38Q9H0F5 515 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 PNPLA8Q9NP80 782 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms