RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 GABBR2O75899 941 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 SOAT2O75908 522 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 NDUFA10O95299 355 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 LRG1P02750 347 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 POU2F2P09086 479 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 HNRNPA1P09651 372 aaKnown RBP eCLIP12.98□□□□□ -0.33
LINC00339-204ENST00000434233 ATF6P18850 670 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 MMP8P22894 467 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 GTF2F1P35269 517 aaKnown RBP eCLIP12.98□□□□□ -0.33
LINC00339-204ENST00000434233 GPR15P49685 360 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 RGS7P49802 495 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 CCZ1BP86790 482 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 CCZ1P86791 482 aaPredicted RBP12.98□□□□□ -0.33
LINC00339-204ENST00000434233 C1QBPQ07021 282 aaKnown RBP12.98□□□□□ -0.33
LINC00339-204ENST00000434233 TWF1Q12792 350 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 PDCLQ13371 301 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 ZNF268Q14587 947 aaPredicted RBP12.98□□□□□ -0.33
LINC00339-204ENST00000434233 SDHAF4Q5VUM1 108 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 ITIH5Q86UX2 942 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 MCOLN2Q8IZK6 566 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 GIPC2Q8TF65 315 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 ZNF512Q96ME7 567 aaPredicted RBP12.98□□□□□ -0.33
LINC00339-204ENST00000434233 CPXM1Q96SM3 734 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 CDX2Q99626 313 aaPredicted RBP12.98□□□□□ -0.33
LINC00339-204ENST00000434233 FBXO44Q9H4M3 255 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 ST7Q9NRC1 585 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 DZANK1Q9NVP4 752 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 ZDHHC7Q9NXF8 308 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 TAS2R14Q9NYV8 317 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 ADAM22Q9P0K1 906 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 USP3Q9Y6I4 520 aa12.98□□□□□ -0.33
LINC00339-204ENST00000434233 FAM92AA1XBS5 289 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 TMCO5BA8MYB1 307 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 FBXO21O94952 628 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 CALB1P05937 261 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 SRGAP2BP0DMP2 458 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 LCP1P13796 627 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 MAGEA1P43355 309 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 TKTL1P51854 596 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 SLC5A3P53794 718 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 KRT83P78385 493 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 PTP4A2Q12974 167 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 VEPH1Q14D04 833 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 SPA17Q15506 151 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 PTPN20Q4JDL3 420 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 PM20D1Q6GTS8 502 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 LLGL2Q6P1M3 1020 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 DNAJB7Q7Z6W7 309 aaPredicted RBP12.97□□□□□ -0.33
LINC00339-204ENST00000434233 ZDHHC17Q8IUH5 632 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 ELMOD1Q8N336 334 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 CMASQ8NFW8 434 aaPredicted RBP12.97□□□□□ -0.33
LINC00339-204ENST00000434233 VN1R2Q8NFZ6 395 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 IPO4Q8TEX9 1081 aaKnown RBP12.97□□□□□ -0.33
LINC00339-204ENST00000434233 PSMG2Q969U7 264 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 MYRFLQ96LU7 910 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 TTLL2Q9BWV7 592 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 PRKD2Q9BZL6 878 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 CNGB3Q9NQW8 809 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 SPTLC3Q9NUV7 552 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 WDR35Q9P2L0 1181 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 INTUQ9ULD6 942 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 STRIP2Q9ULQ0 834 aa12.97□□□□□ -0.33
LINC00339-204ENST00000434233 CCDC195A0A1B0GUA6 201 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 ANKRD62A6NC57 917 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 E5RJQ4 531 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 ZNF263O14978 683 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 IPO7O95373 1038 aaKnown RBP12.96□□□□□ -0.33
LINC00339-204ENST00000434233 ZBED1O96006 694 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 H2AFZP0C0S5 128 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 MYBL1P10243 752 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 HMGA1P17096 107 aaKnown RBP12.96□□□□□ -0.33
LINC00339-204ENST00000434233 HOXB8P17481 243 aaPredicted RBP12.96□□□□□ -0.33
LINC00339-204ENST00000434233 PTPN2P17706 415 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 YWHAQP27348 245 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 GSCP56915 257 aaPredicted RBP12.96□□□□□ -0.33
LINC00339-204ENST00000434233 MTF1Q14872 753 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 COL19A1Q14993 1142 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 TAF12Q16514 161 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 CTC1Q2NKJ3 1217 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 OR6B2Q6IFH4 312 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 ANKRD54Q6NXT1 300 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 H2AFVQ71UI9 128 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 Q7L0L9 218 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 MON1BQ7L1V2 547 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 GPRIN1Q7Z2K8 1008 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 SCUBE3Q8IX30 993 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 DEFB123Q8N688 67 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 SCAMP5Q8TAC9 235 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 GPR152Q8TDT2 470 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 IRGQQ8WZA9 623 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 TRIM11Q96F44 468 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 TRMT2BQ96GJ1 504 aaKnown RBP12.96□□□□□ -0.33
LINC00339-204ENST00000434233 ZNF830Q96NB3 372 aaPredicted RBP12.96□□□□□ -0.33
LINC00339-204ENST00000434233 KCNF1Q9H3M0 494 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 SYNCQ9H7C4 482 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 LUC7LQ9NQ29 371 aaKnown RBP12.96□□□□□ -0.33
LINC00339-204ENST00000434233 MTMR10Q9NXD2 777 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 UXTQ9UBK9 157 aaPredicted RBP12.96□□□□□ -0.33
LINC00339-204ENST00000434233 SCML2Q9UQR0 700 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 PCDHA13Q9Y5I0 950 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms