RNA–Protein interactions for RNA: ENST00000419378.5

HMGN1-205, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-205ENST00000419378 PAAF1Q9BRP4 392 aa7.54□□□□□ -1.2
HMGN1-205ENST00000419378 DUSP23Q9BVJ7 150 aa7.54□□□□□ -1.2
HMGN1-205ENST00000419378 CCDC94Q9BW85 323 aaPredicted RBP7.54□□□□□ -1.2
HMGN1-205ENST00000419378 COLEC11Q9BWP8 271 aa7.54□□□□□ -1.2
HMGN1-205ENST00000419378 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.54□□□□□ -1.2
HMGN1-205ENST00000419378 TPSG1Q9NRR2 321 aa7.54□□□□□ -1.2
HMGN1-205ENST00000419378 MRPL17Q9NRX2 175 aaKnown RBP7.54□□□□□ -1.2
HMGN1-205ENST00000419378 TOPORSQ9NS56 1045 aaPredicted RBP7.54□□□□□ -1.2
HMGN1-205ENST00000419378 TBX20Q9UMR3 447 aa7.54□□□□□ -1.2
HMGN1-205ENST00000419378 FAM50BQ9Y247 325 aa7.54□□□□□ -1.2
HMGN1-205ENST00000419378 MSRB2Q9Y3D2 182 aa7.54□□□□□ -1.2
HMGN1-205ENST00000419378 HCFC2Q9Y5Z7 792 aa7.54□□□□□ -1.2
HMGN1-205ENST00000419378 TRIOO75962 3097 aa7.54□□□□□ -1.2
HMGN1-205ENST00000419378 SF3B1O75533 1304 aaKnown RBP eCLIP7.53□□□□□ -1.24e-6■□□□□ 8.6
HMGN1-205ENST00000419378 CITO14578 2027 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 SMIM28A0A1B0GU29 152 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 MYMKA6NI61 221 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 HNRNPDLO14979 420 aaKnown RBP7.53□□□□□ -1.2
HMGN1-205ENST00000419378 CLDN3O15551 220 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 MEFVO15553 781 aaPredicted RBP7.53□□□□□ -1.2
HMGN1-205ENST00000419378 CUTAO60888 179 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 TP53P04637 393 aaPredicted RBP7.53□□□□□ -1.2
HMGN1-205ENST00000419378 CNPP09543 421 aaKnown RBP7.53□□□□□ -1.2
HMGN1-205ENST00000419378 FAM87AP0C7U9 286 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 KCNE1P15382 129 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 EPCAMP16422 314 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 GAP43P17677 238 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 ABCD1P33897 745 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 ADMP35318 185 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 ME1P48163 572 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 GLUD2P49448 558 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 LIG4P49917 911 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 GTF2BQ00403 316 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 ZP2Q05996 745 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 MCL1Q07820 350 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 NCAPHQ15003 741 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 SMAD2Q15796 467 aaKnown RBP7.53□□□□□ -1.2
HMGN1-205ENST00000419378 XKR4Q5GH76 650 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 AXDND1Q5T1B0 1012 aaPredicted RBP7.53□□□□□ -1.2
HMGN1-205ENST00000419378 ATL3Q6DD88 541 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 MRM1Q6IN84 353 aaKnown RBP7.53□□□□□ -1.2
HMGN1-205ENST00000419378 ANKRD54Q6NXT1 300 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 FUT10Q6P4F1 479 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 SYCE2Q6PIF2 218 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 PRR23CQ6ZRP0 262 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 SFR1Q86XK3 245 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 SHISA5Q8N114 240 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 TMEM151AQ8N4L1 468 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 HASPINQ8TF76 798 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 SLC22A17Q8WUG5 538 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 GATA6Q92908 595 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 DNAJC19Q96DA6 116 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 B3GALT6Q96L58 329 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 KREMEN1Q96MU8 473 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 ACAP3Q96P50 834 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 KLHL5Q96PQ7 755 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 PPP1R10Q96QC0 940 aaKnown RBP7.53□□□□□ -1.2
HMGN1-205ENST00000419378 PANK2Q9BZ23 570 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 GPR62Q9BZJ7 368 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 HAPLN2Q9GZV7 340 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 ST6GALNAC4Q9H4F1 302 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 GOLGA2P5Q9HBQ8 144 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 CD320Q9NPF0 282 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 ADAM28Q9UKQ2 775 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 CFAP45Q9UL16 551 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 SSX2IPQ9Y2D8 614 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 ZDHHC9Q9Y397 364 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 USP15Q9Y4E8 981 aaPredicted RBP7.53□□□□□ -1.2
HMGN1-205ENST00000419378 TRIP11Q15643 1979 aa7.53□□□□□ -1.2
HMGN1-205ENST00000419378 PDCD11Q14690 1871 aaKnown RBP7.52□□□□□ -1.21
HMGN1-205ENST00000419378 FRMD3A2A2Y4 597 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 TMEM189-UBE2V1I3L0A0 370 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 FAM189A1O60320 539 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 TADA2AO75478 443 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 CXCL8P10145 99 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 IGFBP6P24592 240 aaPredicted RBP7.52□□□□□ -1.21
HMGN1-205ENST00000419378 ETV3P41162 512 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 MATR3P43243 847 aaKnown RBP eCLIP7.52□□□□□ -1.21
HMGN1-205ENST00000419378 CLCN4P51793 760 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 CLCNKBP51801 687 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 DSG1Q02413 1049 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 SLC10A6Q3KNW5 377 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 USP41Q3LFD5 358 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 BBS9Q3SYG4 887 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 ZC2HC1CQ53FD0 456 aaPredicted RBP7.52□□□□□ -1.21
HMGN1-205ENST00000419378 RTP2Q5QGT7 225 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 ZBTB41Q5SVQ8 909 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 KIAA1841Q6NSI8 718 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 SLC39A4Q6P5W5 647 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 ALKAL1Q6UXT8 129 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 ADHFE1Q8IWW8 467 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 GIMAP7Q8NHV1 300 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 SUSD6Q92537 303 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 DHX58Q96C10 678 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 HVCN1Q96D96 273 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 CHAMP1Q96JM3 812 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 UROC1Q96N76 676 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 ZMAT2Q96NC0 199 aaKnown RBP7.52□□□□□ -1.21
HMGN1-205ENST00000419378 MSTO1Q9BUK6 570 aa7.52□□□□□ -1.21
HMGN1-205ENST00000419378 APOL5Q9BWW9 433 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms