RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 FAM161BQ96MY7 647 aa17.92■□□□□ 0.46
PHRF1-202ENST00000413872 RNF208Q9H0X6 261 aa17.92■□□□□ 0.46
PHRF1-202ENST00000413872 EPC1Q9H2F5 836 aa17.92■□□□□ 0.46
PHRF1-202ENST00000413872 RUBCNLQ9H714 662 aa17.92■□□□□ 0.46
PHRF1-202ENST00000413872 STX18Q9P2W9 335 aaKnown RBP17.92■□□□□ 0.46
PHRF1-202ENST00000413872 TRMT6Q9UJA5 497 aaKnown RBP17.92■□□□□ 0.46
PHRF1-202ENST00000413872 SPDYE5A6NIY4 337 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 CLASP2O75122 1294 aaKnown RBP17.91■□□□□ 0.46
PHRF1-202ENST00000413872 TGM2P21980 687 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 SPDYE7PQ495Y7 208 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 SNX31Q8N9S9 440 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 RXFP2Q8WXD0 754 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 CYP4F11Q9HBI6 524 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 LRRC4BQ9NT99 713 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 KIF17Q9P2E2 1029 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 VGLL3A8MV65 326 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 TOMM70O94826 608 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 TUFMP49411 452 aaKnown RBP17.91■□□□□ 0.46
PHRF1-202ENST00000413872 ZNF135P52742 658 aaPredicted RBP17.91■□□□□ 0.46
PHRF1-202ENST00000413872 PKN3Q6P5Z2 889 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 HS6ST3Q8IZP7 471 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 LRRC43Q8N309 656 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 PCYOX1LQ8NBM8 494 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 UBE2OQ9C0C9 1292 aaKnown RBP17.91■□□□□ 0.46
PHRF1-202ENST00000413872 PORCNQ9H237 461 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 STN1Q9H668 368 aaKnown RBP17.91■□□□□ 0.46
PHRF1-202ENST00000413872 LRRIQ3A6PVS8 624 aaPredicted RBP17.91■□□□□ 0.46
PHRF1-202ENST00000413872 TCP11X1B4DZS4 312 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 IRF6O14896 467 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 C11orf63Q6NUN7 778 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 CERS5Q8N5B7 392 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 KIAA0895Q8NCT3 520 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 BRD8Q9H0E9 1235 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 DMAP1Q9NPF5 467 aaPredicted RBP17.91■□□□□ 0.46
PHRF1-202ENST00000413872 VPS28Q9UK41 221 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 SDR42E2A6NKP2 422 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 CYTH3O43739 400 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 POMCP01189 267 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 SERPIND1P05546 499 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 PLEKP08567 350 aaPredicted RBP17.91■□□□□ 0.46
PHRF1-202ENST00000413872 RAP1GAPP47736 663 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 EIF2B5Q13144 721 aaKnown RBP17.91■□□□□ 0.46
PHRF1-202ENST00000413872 CUL3Q13618 768 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 SETD3Q86TU7 594 aaPredicted RBP17.91■□□□□ 0.46
PHRF1-202ENST00000413872 LRRC40Q9H9A6 602 aa17.91■□□□□ 0.46
PHRF1-202ENST00000413872 TIMM44O43615 452 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 PLA2G6O60733 806 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 VCPP55072 806 aaKnown RBP17.9■□□□□ 0.46
PHRF1-202ENST00000413872 RETSATQ6NUM9 610 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 FAM118BQ9BPY3 351 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.9■□□□□ 0.46
PHRF1-202ENST00000413872 TEKT2Q9UIF3 430 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 C5orf58C9J3I9 102 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 RENBPP51606 427 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 PREPLQ4J6C6 727 aaPredicted RBP17.9■□□□□ 0.46
PHRF1-202ENST00000413872 NT5DC1Q5TFE4 455 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 AGAP9Q5VTM2 703 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 LRRC6Q86X45 466 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 CARNMT1Q8N4J0 409 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 AGR3Q8TD06 166 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 SERPINB12Q96P63 405 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 SCUBE2Q9NQ36 999 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 MROH7Q68CQ1 1323 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 LZTS3O60299 673 aaPredicted RBP17.9■□□□□ 0.46
PHRF1-202ENST00000413872 KLHL2O95198 593 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 CRTAMO95727 393 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 GCKP35557 465 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 NDST1P52848 882 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 DMTNQ08495 405 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 KRT72Q14CN4 511 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 ANO5Q75V66 913 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 C4orf33Q8N1A6 199 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 VPS37AQ8NEZ2 397 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 CCDC126Q96EE4 140 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 FAM167BQ9BTA0 163 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 SNX5Q9Y5X3 404 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 RPS6KL1Q9Y6S9 549 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 RIC1Q4ADV7 1423 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 ITGALP20701 1170 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 MAP2K5Q13163 448 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 INPP5AQ14642 412 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 ZNF284Q2VY69 593 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 DEFB115Q30KQ5 88 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 LRRC8EQ6NSJ5 796 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 SPOCD1Q6ZMY3 1216 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.9■□□□□ 0.461e-6■■■□□ 18.6
PHRF1-202ENST00000413872 FAM131BQ86XD5 332 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 BLOC1S5Q8TDH9 187 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 MTMR9Q96QG7 549 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 PRPF18Q99633 342 aaKnown RBP17.9■□□□□ 0.46
PHRF1-202ENST00000413872 ADGRE3Q9BY15 652 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 GIMAP4Q9NUV9 329 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 TSPAN16Q9UKR8 245 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 SLC39A10Q9ULF5 831 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 UBIAD1Q9Y5Z9 338 aa17.9■□□□□ 0.46
PHRF1-202ENST00000413872 CYP3A7-CYP3A51PA0A087WV96 503 aa17.89■□□□□ 0.46
PHRF1-202ENST00000413872 FAM95CA0A1B0GW59 222 aa17.89■□□□□ 0.46
PHRF1-202ENST00000413872 XYLBO75191 536 aa17.89■□□□□ 0.46
PHRF1-202ENST00000413872 VPS26AO75436 327 aa17.89■□□□□ 0.46
PHRF1-202ENST00000413872 VCLP18206 1134 aa17.89■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms