RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 GTF2A2P52657 109 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 CLDN10P78369 228 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 ROR1Q01973 937 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 LMNB2Q03252 620 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 KBTBD12Q3ZCT8 623 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 LRRC6Q86X45 466 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 NME8Q8N427 588 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 TCP10LQ8TDR4 215 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 FGD4Q96M96 766 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 C2orf40Q9H1Z8 148 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 OLIG2Q13516 323 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 ACCSLQ4AC99 568 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 ILDR2Q71H61 639 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 BBOF1Q8ND07 529 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 CKAP2Q8WWK9 683 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 CLDN5O00501 218 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 MT-ND3P03897 115 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 INHBAP08476 426 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 KRT7P08729 469 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 KRT16P08779 473 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 TAC1P20366 129 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 SAT1P21673 171 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 OSBPP22059 807 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 SESN2P58004 480 aaPredicted RBP13.99□□□□□ -0.17
VPS54-203ENST00000409558 TRNP1Q6NT89 227 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 STAMBPL1Q96FJ0 436 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 SGSM3Q96HU1 749 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 PDZD7Q9H5P4 517 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 HESX1Q9UBX0 185 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 PIN4Q9Y237 131 aaKnown RBP13.99□□□□□ -0.17
VPS54-203ENST00000409558 UPP2O95045 317 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 RARBP10826 455 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 CYP3A5P20815 502 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 EIF4BP23588 611 aaKnown RBP13.99□□□□□ -0.17
VPS54-203ENST00000409558 LMO2P25791 158 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 SPARCL1Q14515 664 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 RNASEH2BQ5TBB1 312 aaKnown RBP13.99□□□□□ -0.17
VPS54-203ENST00000409558 MROH9Q5TGP6 573 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 ECHDC2Q86YB7 292 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 TEX2Q8IWB9 1127 aa13.99□□□□□ -0.17
VPS54-203ENST00000409558 ACTR5Q9H9F9 607 aaPredicted RBP13.99□□□□□ -0.17
VPS54-203ENST00000409558 IGKV6D-21A0A0A0MT36 114 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 SIGLEC16A6NMB1 481 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 PAEPP09466 180 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 CTSHP09668 335 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 TGFB3P10600 412 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 BEX3Q00994 111 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 MGAT5Q09328 741 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 FAAP100Q0VG06 881 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 PRPF39Q86UA1 669 aaKnown RBP13.98□□□□□ -0.17
VPS54-203ENST00000409558 VCPIP1Q96JH7 1222 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 ADARB2Q9NS39 739 aaKnown RBP13.98□□□□□ -0.17
VPS54-203ENST00000409558 STRIP2Q9ULQ0 834 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 SSC5DA1L4H1 1573 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 ATP8B3O60423 1300 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 CFAP69A5D8W1 941 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 PYGBP11216 843 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 FGFR1P11362 822 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 ZNF132P52740 706 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 ELF3P78545 371 aaPredicted RBP13.98□□□□□ -0.17
VPS54-203ENST00000409558 PIGWQ7Z7B1 504 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 TRABD2AQ86V40 505 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 MAML1Q92585 1016 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 ZMAT2Q96NC0 199 aaKnown RBP13.98□□□□□ -0.17
VPS54-203ENST00000409558 CITO14578 2027 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 CLUHO75153 1309 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 C22orf31O95567 290 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 GPD1P21695 349 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 SDC4P31431 198 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 SLC25A11Q02978 314 aaKnown RBP13.98□□□□□ -0.17
VPS54-203ENST00000409558 CAV1Q03135 178 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 SETDB1Q15047 1291 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 EMC10Q5UCC4 262 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 ZCCHC23Q6ZST2 131 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 TSHZ1Q6ZSZ6 1077 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 AGR3Q8TD06 166 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 NT5C1AQ9BXI3 368 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 MYLK2Q9H1R3 596 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 RNF39Q9H2S5 420 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 NOD2Q9HC29 1040 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 ARL2BPQ9Y2Y0 163 aa13.98□□□□□ -0.17
VPS54-203ENST00000409558 RBBP6Q7Z6E9 1792 aaKnown RBP13.98□□□□□ -0.17
VPS54-203ENST00000409558 USP12O75317 370 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 GCAP28676 217 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 GBE1Q04446 702 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 OASLQ15646 514 aaKnown RBP13.97□□□□□ -0.17
VPS54-203ENST00000409558 TRIM68Q6AZZ1 485 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 CGB2Q6NT52 195 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 ASNSD1Q9NWL6 643 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 ABLIM1O14639 778 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 PIGRP01833 764 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 PTK7Q13308 1070 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 CROCCP2Q86T23 111 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 DNAJB3Q8WWF6 145 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 FZD8Q9H461 694 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 ARMCX1Q9P291 453 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 C5orf60A6NFR6 353 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 PDHXO00330 501 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 GJA5P36382 358 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 DPYSL3Q14195 570 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms