RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 ZFYVE19Q96K21 471 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 CNDP1Q96KN2 507 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 DACH2Q96NX9 599 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 COQ7Q99807 217 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 NGRNQ9NPE2 291 aaKnown RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 V9GYQ6 96 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 MYOCOSA0A1B0GUC4 107 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 PIK3R2O00459 728 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 PABPC4LP0CB38 370 aaKnown RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 THRAP10827 490 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 PEX6Q13608 980 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 CARTPTQ16568 116 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 FASTKD1Q53R41 847 aaKnown RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 TMEM53Q6P2H8 277 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 CCDC103Q8IW40 242 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 BHLHE22Q8NFJ8 381 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 NEDD1Q8NHV4 660 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 GPATCH1Q9BRR8 931 aaKnown RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 IL1RL2Q9HB29 575 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 IL17RBQ9NRM6 502 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 ZNF219Q9P2Y4 722 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 SEL1LQ9UBV2 794 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 GPC6Q9Y625 555 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 NDUFB5O43674 189 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 MFN2O95140 757 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 SMARCA1P28370 1054 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 ECM1Q16610 540 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 C16orf46Q6P387 395 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 CYP2R1Q6VVX0 501 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 PPP1R14BQ96C90 147 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 PANX3Q96QZ0 392 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 NRDE2Q9H7Z3 1164 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 MAN1C1Q9NR34 630 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 SERPINB13Q9UIV8 391 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 MINPP1Q9UNW1 487 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 KBTBD13C9JR72 458 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 TAF4O00268 1085 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 FSCN2O14926 492 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 PRPSAP2O60256 369 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 CETPP11597 493 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 GTF2IP78347 998 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 KRT72Q14CN4 511 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 ERFEQ4G0M1 354 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 TMEM119Q4V9L6 283 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 ATP13A4Q4VNC1 1196 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 HAUS6Q7Z4H7 955 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 KYQ8NBH2 561 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 TMEM35BQ8NCS4 154 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 ACTL9Q8TC94 416 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 SH3GL1Q99961 368 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 OSBPL6Q9BZF3 934 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 KCTD10Q9H3F6 313 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 GPAMQ9HCL2 828 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 LGALS13Q9UHV8 139 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 PLA2G4CQ9UP65 541 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 RIMS1Q86UR5 1692 aaKnown RBP9.66□□□□□ -0.86
COL28A1-201ENST00000399429 KRT3P12035 628 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 ETFBP38117 255 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 SCNN1DP51172 638 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 CDH6P55285 790 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 TMEM62Q0P6H9 643 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 BFSP2Q13515 415 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 CALML6Q8TD86 181 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 FAM172AQ8WUF8 416 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 PIGBQ92521 554 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 CBWD1Q9BRT8 395 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 WDR11Q9BZH6 1224 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 ARMC7Q9H6L4 198 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 MRGBPQ9NV56 204 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 SHOC2Q9UQ13 582 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 TELO2Q9Y4R8 837 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 MYH13Q9UKX3 1938 aa9.66□□□□□ -0.86
COL28A1-201ENST00000399429 SYNJ2BP-COX16A0A087WUM0 186 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 A0A087WXM4 84 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 LRRIQ4A6NIV6 560 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 CNOT3O75175 753 aaKnown RBP9.65□□□□□ -0.86
COL28A1-201ENST00000399429 KRT7P08729 469 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 PTK2BQ14289 1009 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 MFSD7Q6UXD7 560 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 SNX32Q86XE0 403 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 MCF2L2Q86YR7 1114 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 BORCS5Q969J3 196 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 PGBD4Q96DM1 585 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 MTMR9Q96QG7 549 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 GCOM2Q9BZD3 368 aaPredicted RBP9.65□□□□□ -0.86
COL28A1-201ENST00000399429 MRPL40Q9NQ50 206 aaKnown RBP9.65□□□□□ -0.86
COL28A1-201ENST00000399429 THAP1Q9NVV9 213 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 DDX56Q9NY93 547 aaKnown RBP9.65□□□□□ -0.86
COL28A1-201ENST00000399429 COX16Q9P0S2 106 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 AJAP1Q9UKB5 411 aaPredicted RBP9.65□□□□□ -0.86
COL28A1-201ENST00000399429 CDY2AQ9Y6F7 541 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 CDY1Q9Y6F8 540 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 PROSCO94903 275 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 OAS1P00973 400 aaKnown RBP9.65□□□□□ -0.86
COL28A1-201ENST00000399429 ABHD2P08910 425 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 T-ENOLP0DO92 83 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 JAK1P23458 1154 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 SLC1A6P48664 564 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 ENTPD1P49961 510 aa9.65□□□□□ -0.86
COL28A1-201ENST00000399429 ARPC4P59998 168 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms