RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 ADAM7Q9H2U9 754 aa24.21■■□□□ 1.47
VPS16-201ENST00000380443 SNX25Q9H3E2 840 aa24.21■■□□□ 1.47
VPS16-201ENST00000380443 NINJ2Q9NZG7 142 aa24.21■■□□□ 1.47
VPS16-201ENST00000380443 RSPH14Q9UHP6 348 aa24.21■■□□□ 1.47
VPS16-201ENST00000380443 SCN1AP35498 2009 aa24.2■■□□□ 1.46
VPS16-201ENST00000380443 ZNF487B1APH4 448 aa24.2■■□□□ 1.46
VPS16-201ENST00000380443 FAM107AO95990 144 aa24.2■■□□□ 1.46
VPS16-201ENST00000380443 GNL1P36915 607 aaPredicted RBP24.2■■□□□ 1.46
VPS16-201ENST00000380443 BCAT1P54687 386 aa24.2■■□□□ 1.46
VPS16-201ENST00000380443 BEX3Q00994 111 aa24.2■■□□□ 1.46
VPS16-201ENST00000380443 OTUD4Q01804 1114 aaKnown RBP24.2■■□□□ 1.46
VPS16-201ENST00000380443 BST2Q10589 180 aaKnown RBP24.2■■□□□ 1.46
VPS16-201ENST00000380443 GPS1Q13098 491 aa24.2■■□□□ 1.46
VPS16-201ENST00000380443 PMF1Q6P1K2 205 aa24.2■■□□□ 1.46
VPS16-201ENST00000380443 RSPH3Q86UC2 560 aa24.2■■□□□ 1.46
VPS16-201ENST00000380443 RFX6Q8HWS3 928 aa24.2■■□□□ 1.46
VPS16-201ENST00000380443 PCSK1NQ9UHG2 260 aa24.2■■□□□ 1.46
VPS16-201ENST00000380443 GMNCA6NCL1 334 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 M0QZ92 97 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 SGK1O00141 431 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 AKAP5P24588 427 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 LRPAP1P30533 357 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 GJA9P57773 515 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 SMTNL2Q2TAL5 461 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 KCNT1Q5JUK3 1230 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 NLRP14Q86W24 1093 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 RIBC1Q8N443 379 aaPredicted RBP24.19■■□□□ 1.46
VPS16-201ENST00000380443 TOP6BLQ8N6T0 577 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 APPL2Q8NEU8 664 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 LENG1Q96BZ8 264 aaPredicted RBP24.19■■□□□ 1.46
VPS16-201ENST00000380443 ACSF2Q96CM8 615 aaPredicted RBP24.19■■□□□ 1.46
VPS16-201ENST00000380443 TNIP3Q96KP6 325 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 CFAP57Q96MR6 1250 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 RBM15Q96T37 977 aaKnown RBP eCLIP24.19■■□□□ 1.46
VPS16-201ENST00000380443 CXCL16Q9H2A7 254 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 PPCSQ9HAB8 311 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 GGA2Q9UJY4 613 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 IPPQ9Y573 584 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 TRAPPC3O43617 180 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 ACSL3O95573 720 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 SDC4P31431 198 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 MAGEA4P43358 317 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 ARHGEF6Q15052 776 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 KYNUQ16719 465 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 GLRA4Q5JXX5 417 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 HACE1Q8IYU2 909 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 EPS8L3Q8TE67 593 aaKnown RBP24.19■■□□□ 1.46
VPS16-201ENST00000380443 HSFY1Q96LI6 401 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 DDX23Q9BUQ8 820 aaKnown RBP24.19■■□□□ 1.46
VPS16-201ENST00000380443 APOL6Q9BWW8 343 aa24.19■■□□□ 1.46
VPS16-201ENST00000380443 DCDC2CA8MYV0 355 aa24.18■■□□□ 1.46
VPS16-201ENST00000380443 MCF2LO15068 1137 aa24.18■■□□□ 1.46
VPS16-201ENST00000380443 STIP1P31948 543 aaKnown RBP24.18■■□□□ 1.46
VPS16-201ENST00000380443 NKX3-2P78367 333 aa24.18■■□□□ 1.46
VPS16-201ENST00000380443 RNASEH2BQ5TBB1 312 aaKnown RBP24.18■■□□□ 1.46
VPS16-201ENST00000380443 RSAD2Q8WXG1 361 aa24.18■■□□□ 1.46
VPS16-201ENST00000380443 CHST12Q9NRB3 414 aa24.18■■□□□ 1.46
VPS16-201ENST00000380443 HUS1O60921 280 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 WARSP23381 471 aaKnown RBP24.17■■□□□ 1.46
VPS16-201ENST00000380443 PTPN9P43378 593 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 CCT5P48643 541 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 MRPS6P82932 125 aaKnown RBP24.17■■□□□ 1.46
VPS16-201ENST00000380443 ZNF200P98182 395 aaPredicted RBP24.17■■□□□ 1.46
VPS16-201ENST00000380443 PDE4CQ08493 712 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 SKIDA1Q1XH10 827 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 CCDC14Q49A88 953 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 MFSD14CQ5VZR4 134 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 FOXR1Q6PIV2 292 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 SMG8Q8ND04 991 aaKnown RBP24.17■■□□□ 1.46
VPS16-201ENST00000380443 KBTBD7Q8WVZ9 684 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 HSPH1Q92598 858 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 CCT8L2Q96SF2 557 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 SPC25Q9HBM1 224 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 LRRC4CQ9HCJ2 640 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 SLC38A7Q9NVC3 462 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 LGALS13Q9UHV8 139 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 CDH6P55285 790 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 CCDC142Q17RM4 750 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 MICALCLQ6ZW33 695 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 CENPUQ71F23 418 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 SLC26A9Q7LBE3 791 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 MYCBPAPQ8TBZ2 947 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 TMEM121Q9BTD3 319 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 UPF3AQ9H1J1 476 aaKnown RBP24.17■■□□□ 1.46
VPS16-201ENST00000380443 FAM49BQ9NUQ9 324 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 NME7Q9Y5B8 376 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 TRPV2Q9Y5S1 764 aa24.17■■□□□ 1.46
VPS16-201ENST00000380443 A0A087WUV0 522 aaPredicted RBP24.16■■□□□ 1.46
VPS16-201ENST00000380443 MDM4O15151 490 aa24.16■■□□□ 1.46
VPS16-201ENST00000380443 RGS7P49802 495 aa24.16■■□□□ 1.46
VPS16-201ENST00000380443 ERMARDQ5T6L9 678 aa24.16■■□□□ 1.46
VPS16-201ENST00000380443 RPAINQ86UA6 219 aa24.16■■□□□ 1.46
VPS16-201ENST00000380443 PPIL6Q8IXY8 311 aa24.16■■□□□ 1.46
VPS16-201ENST00000380443 UHMK1Q8TAS1 419 aaKnown RBP24.16■■□□□ 1.46
VPS16-201ENST00000380443 HAUS1Q96CS2 278 aa24.16■■□□□ 1.46
VPS16-201ENST00000380443 PEBP4Q96S96 227 aa24.16■■□□□ 1.46
VPS16-201ENST00000380443 CALN1Q9BXU9 219 aa24.16■■□□□ 1.46
VPS16-201ENST00000380443 CASP8AP2Q9UKL3 1982 aa24.16■■□□□ 1.46
VPS16-201ENST00000380443 ATXN2Q99700 1313 aaKnown RBP24.15■■□□□ 1.46
VPS16-201ENST00000380443 E7EVH7 732 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms