RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 C1orf54Q8WWF1 131 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 RSAD2Q8WXG1 361 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 RIN2Q8WYP3 895 aaPredicted RBP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 CENPIQ92674 756 aaPredicted RBP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 KAT2BQ92831 832 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 RTP4Q96DX8 246 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 SGSM3Q96HU1 749 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 UROC1Q96N76 676 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 CPXM1Q96SM3 734 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 PTPN18Q99952 460 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 TRIM31Q9BZY9 425 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 ELOVL4Q9GZR5 314 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 SNX25Q9H3E2 840 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 ZNF408Q9H9D4 720 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 CHST7Q9NS84 486 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 SETD4Q9NVD3 440 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 PAK5Q9P286 719 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 TSPAN16Q9UKR8 245 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 NOVA2Q9UNW9 492 aaKnown RBP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 SMG5Q9UPR3 1016 aaKnown RBP9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 USTQ9Y2C2 406 aa9.13□□□□□ -0.95
SNRNP40-202ENST00000373720 SMIM28A0A1B0GU29 152 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 BCLAF3A2AJT9 711 aaKnown RBP9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 C5orf60A6NFR6 353 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 C3orf70A6NLC5 250 aaPredicted RBP9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 A8MXQ7 604 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 TNPO2O14787 897 aaKnown RBP9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 XPO1O14980 1071 aaKnown RBP9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 CHADO15335 359 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 CA12O43570 354 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 FAM155BO75949 473 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 KIAA0754O94854 1291 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 NPTXRO95502 500 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 F9P00740 461 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 SLC10A3P09131 477 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 DNAJB2P25686 324 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 HTR7P34969 479 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 MAGEA6P43360 314 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 ARSEP51690 589 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 FCGRTP55899 365 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 OSTNP61366 133 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 PURAQ00577 322 aaKnown RBP9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 MTA1Q13330 715 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 ARHGEF6Q15052 776 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 TRADDQ15628 312 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 FSCN1Q16658 493 aaKnown RBP9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 CCDC142Q17RM4 750 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 KIZQ2M2Z5 673 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 P3H1Q32P28 736 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 ZNF394Q53GI3 561 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 LGSNQ5TDP6 509 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 GKAP1Q5VSY0 366 aaPredicted RBP9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 IZUMO3Q5VZ72 239 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 MFSD7Q6UXD7 560 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 ADAT2Q7Z6V5 191 aaKnown RBP9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 RASAL3Q86YV0 1011 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 GBP7Q8N8V2 638 aaPredicted RBP9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 PCSK9Q8NBP7 692 aaKnown RBP9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 NPLOC4Q8TAT6 608 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 PGBD4Q96DM1 585 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 PPP1R2P1Q96PQ5 205 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 RBM15Q96T37 977 aaKnown RBP eCLIP9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 HNRNPABQ99729 332 aaKnown RBP9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 RASSF4Q9H2L5 321 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 EPB41L4BQ9H329 900 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 CDC42EP4Q9H3Q1 356 aaKnown RBP9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 SEMA4AQ9H3S1 761 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 PNPLA8Q9NP80 782 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.12□□□□□ -0.951e-7■■■■■ 50.3
SNRNP40-202ENST00000373720 GJD2Q9UKL4 321 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 STAP1Q9ULZ2 295 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 PTPN22Q9Y2R2 807 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 SNX9Q9Y5X1 595 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 PTCH2Q9Y6C5 1203 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 ANK1P16157 1881 aa9.12□□□□□ -0.95
SNRNP40-202ENST00000373720 GRIN2DO15399 1336 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 CLUHO75153 1309 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 KAT6AQ92794 2004 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 TCRBV7S2A1N4TA0A589 114 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 E7ESA3 106 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 TRDMT1O14717 391 aaKnown RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 MTSS1O43312 755 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 CST8O60676 142 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 PEX10O60683 326 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 ITGBL1O95965 494 aaPredicted RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 COL6A1P12109 1028 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 CST5P28325 142 aaPredicted RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 HOXD10P28358 340 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 PCSK1P29120 753 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 MIPP30301 263 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 CYP2C18P33260 490 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 MAGEA4P43358 317 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 KCNJ1P48048 391 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 HCAR3P49019 387 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 MAGOHP61326 146 aaKnown RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 MRPS25P82663 173 aaKnown RBP9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 ZNF33AQ06730 810 aa9.11□□□□□ -0.95
SNRNP40-202ENST00000373720 ZNF252P-AS1Q0IIN9 211 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms