RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 MED1Q15648 1581 aaPredicted RBP12.04□□□□□ -0.48
SYNE1-204ENST00000367248 PLA2G6O60733 806 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 EIF4BP23588 611 aaKnown RBP12.04□□□□□ -0.48
SYNE1-204ENST00000367248 COILP38432 576 aaPredicted RBP12.04□□□□□ -0.48
SYNE1-204ENST00000367248 TKTL1P51854 596 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 PLCL1Q15111 1095 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 PDK2Q15119 407 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 SLC39A12Q504Y0 691 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 EMC1Q8N766 993 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 HIPK4Q8NE63 616 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 BLOC1S5Q8TDH9 187 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 ZBTB45Q96K62 511 aaPredicted RBP12.04□□□□□ -0.48
SYNE1-204ENST00000367248 DUSP9Q99956 384 aaKnown RBP12.04□□□□□ -0.48
SYNE1-204ENST00000367248 LACRTQ9GZZ8 138 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 ACTR5Q9H9F9 607 aaPredicted RBP12.04□□□□□ -0.48
SYNE1-204ENST00000367248 CRLS1Q9UJA2 301 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 CDY2AQ9Y6F7 541 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 ASTN2O75129 1339 aaPredicted RBP12.04□□□□□ -0.48
SYNE1-204ENST00000367248 KCNT1Q5JUK3 1230 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 RABGAP1LQ5R372 815 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 UPF3AQ9H1J1 476 aaKnown RBP12.04□□□□□ -0.48
SYNE1-204ENST00000367248 PPCSQ9HAB8 311 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 PKP3Q9Y446 797 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 NRCAMQ92823 1304 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 ANKRD63C9JTQ0 380 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 SPECC1L-ADORA2AF8WAN1 911 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 XYLBO75191 536 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 ANXA9O76027 345 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 RALBP11234 206 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 USP10Q14694 798 aaKnown RBP12.04□□□□□ -0.48
SYNE1-204ENST00000367248 SGO1Q5FBB7 561 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 ZNF606Q8WXB4 792 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 PCDHB5Q9Y5E4 795 aa12.04□□□□□ -0.48
SYNE1-204ENST00000367248 A8MX80 341 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 ITIH5Q86UX2 942 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 TSPAN17Q96FV3 270 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 CORO1BQ9BR76 489 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 PACSIN1Q9BY11 444 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.03□□□□□ -0.48
SYNE1-204ENST00000367248 CHRM3P20309 590 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 MLH1P40692 756 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 ITGA8P53708 1063 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 AMPD2Q01433 879 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 POM121L1PQ3SYA9 428 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 REXO1L1PQ8IX06 675 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 PHACTR4Q8IZ21 702 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 MRPL17Q9NRX2 175 aaKnown RBP12.03□□□□□ -0.48
SYNE1-204ENST00000367248 DCTN4Q9UJW0 460 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 BCL9LQ86UU0 1499 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 ATP9AO75110 1047 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 SPAG7O75391 227 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 SPRP35270 261 aaPredicted RBP12.03□□□□□ -0.48
SYNE1-204ENST00000367248 SCNN1GP51170 649 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 PLPP4Q5VZY2 271 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 SLC26A7Q8TE54 656 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 ZNF669Q96BR6 464 aaPredicted RBP12.03□□□□□ -0.48
SYNE1-204ENST00000367248 TGS1Q96RS0 853 aaKnown RBP12.03□□□□□ -0.48
SYNE1-204ENST00000367248 CELF4Q9BZC1 486 aaKnown RBP12.03□□□□□ -0.48
SYNE1-204ENST00000367248 HIPK3Q9H422 1215 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 POLBP06746 335 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 GLRA2P23416 452 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 MAGEA4P43358 317 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 NDST1P52848 882 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 TMEM134Q9H6X4 195 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 RAD18Q9NS91 495 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 RAB23Q9ULC3 237 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 SMG5Q9UPR3 1016 aaKnown RBP12.03□□□□□ -0.48
SYNE1-204ENST00000367248 CAPN6Q9Y6Q1 641 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 LACTBL1A8MY62 500 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 BTBD19C9JJ37 291 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 STX7O15400 261 aaKnown RBP12.03□□□□□ -0.48
SYNE1-204ENST00000367248 MORF4L2Q15014 288 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 C16orf59Q7L2K0 433 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 SCUBE2Q9NQ36 999 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 AP4E1Q9UPM8 1137 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 CLEC16AQ2KHT3 1053 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 SLFN11Q7Z7L1 901 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 DDX42Q86XP3 938 aaKnown RBP eCLIP12.03□□□□□ -0.48
SYNE1-204ENST00000367248 PPIL6Q8IXY8 311 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 HELQQ8TDG4 1101 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 RXFP2Q8WXD0 754 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 OTULINQ96BN8 352 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 TSPAN16Q9UKR8 245 aa12.03□□□□□ -0.48
SYNE1-204ENST00000367248 TBC1D3BA6NDS4 549 aa12.02□□□□□ -0.48
SYNE1-204ENST00000367248 DIAPH2O60879 1101 aa12.02□□□□□ -0.48
SYNE1-204ENST00000367248 C1QBPQ07021 282 aaKnown RBP12.02□□□□□ -0.48
SYNE1-204ENST00000367248 SPDYE7PQ495Y7 208 aa12.02□□□□□ -0.48
SYNE1-204ENST00000367248 TFAP2DQ7Z6R9 452 aa12.02□□□□□ -0.48
SYNE1-204ENST00000367248 NOA1Q8NC60 698 aaKnown RBP12.02□□□□□ -0.48
SYNE1-204ENST00000367248 STAMBPL1Q96FJ0 436 aa12.02□□□□□ -0.48
SYNE1-204ENST00000367248 ELMO2Q96JJ3 720 aa12.02□□□□□ -0.48
SYNE1-204ENST00000367248 ALG13Q9NP73 1137 aaKnown RBP12.02□□□□□ -0.48
SYNE1-204ENST00000367248 PSMC3IPQ9P2W1 217 aaPredicted RBP12.02□□□□□ -0.48
SYNE1-204ENST00000367248 MAFO75444 373 aaPredicted RBP12.02□□□□□ -0.49
SYNE1-204ENST00000367248 PYGLP06737 847 aa12.02□□□□□ -0.49
SYNE1-204ENST00000367248 FAM110CQ1W6H9 321 aa12.02□□□□□ -0.49
SYNE1-204ENST00000367248 SLC47A2Q86VL8 602 aa12.02□□□□□ -0.49
SYNE1-204ENST00000367248 SNX31Q8N9S9 440 aa12.02□□□□□ -0.49
SYNE1-204ENST00000367248 LENG1Q96BZ8 264 aaPredicted RBP12.02□□□□□ -0.49
SYNE1-204ENST00000367248 INPP4AQ96PE3 977 aaPredicted RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms