RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 CFIP05156 583 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 KRT19P08727 400 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 HNRNPLP14866 589 aaKnown RBP eCLIP14.8□□□□□ -0.04
VPS29-201ENST00000360579 DDIT3P35638 169 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 GRIK1P39086 918 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 GRIA2P42262 883 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 TNFRSF4P43489 277 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 RESTQ13127 1097 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 DUOXA1Q1HG43 343 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 ZNF423Q2M1K9 1284 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 MAP7D1Q3KQU3 841 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 PREPLQ4J6C6 727 aaPredicted RBP14.8□□□□□ -0.04
VPS29-201ENST00000360579 SLC36A4Q6YBV0 504 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 TRMT11Q7Z4G4 463 aaKnown RBP14.8□□□□□ -0.04
VPS29-201ENST00000360579 OSTM1Q86WC4 334 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 DDX42Q86XP3 938 aaKnown RBP eCLIP14.8□□□□□ -0.04
VPS29-201ENST00000360579 PGBD3Q8N328 593 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 KCNV2Q8TDN2 545 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 HMGB4Q8WW32 186 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 SPOCK2Q92563 424 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 ACCSQ96QU6 501 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 SYT15Q9BQS2 421 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 ARHGEF4Q9NR80 690 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 CDH9Q9ULB4 789 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 MYO16Q9Y6X6 1858 aa14.8□□□□□ -0.04
VPS29-201ENST00000360579 NBEAQ8NFP9 2946 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 TCRBV21S2A2A0A5A6 115 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 ZNF840PA6NDX5 716 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 TRIM66O15016 1216 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 PPP1R37O75864 691 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 SERPINF2P08697 491 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 TMEM191BP0C7N4 346 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 GARTP22102 1010 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 KIR2DL1P43626 348 aaPredicted RBP14.79□□□□□ -0.04
VPS29-201ENST00000360579 ZXDBP98169 803 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 ITPR1Q14643 2758 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 SOWAHAQ2M3V2 549 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 NUDT18Q6ZVK8 323 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 SFR1Q86XK3 245 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 ASCC3Q8N3C0 2202 aaKnown RBP14.79□□□□□ -0.04
VPS29-201ENST00000360579 CXorf38Q8TB03 319 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 MYLPFQ96A32 169 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 TTLL2Q9BWV7 592 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 GTPBP2Q9BX10 602 aaKnown RBP14.79□□□□□ -0.04
VPS29-201ENST00000360579 MRPL44Q9H9J2 332 aaKnown RBP14.79□□□□□ -0.04
VPS29-201ENST00000360579 TBC1D14Q9P2M4 693 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 MBD1Q9UIS9 605 aaPredicted RBP14.79□□□□□ -0.04
VPS29-201ENST00000360579 CPQQ9Y646 472 aa14.79□□□□□ -0.04
VPS29-201ENST00000360579 ATXN2Q99700 1313 aaKnown RBP14.78□□□□□ -0.04
VPS29-201ENST00000360579 ZBTB24O43167 697 aaPredicted RBP14.78□□□□□ -0.04
VPS29-201ENST00000360579 OLFM2O95897 454 aa14.78□□□□□ -0.04
VPS29-201ENST00000360579 ADH5P11766 374 aa14.78□□□□□ -0.04
VPS29-201ENST00000360579 GAP43P17677 238 aa14.78□□□□□ -0.04
VPS29-201ENST00000360579 BDNFP23560 247 aa14.78□□□□□ -0.04
VPS29-201ENST00000360579 ITPKAP23677 461 aa14.78□□□□□ -0.04
VPS29-201ENST00000360579 SLC6A11P48066 632 aa14.78□□□□□ -0.04
VPS29-201ENST00000360579 NOP14P78316 857 aaKnown RBP14.78□□□□□ -0.04
VPS29-201ENST00000360579 RPL6Q02878 288 aaKnown RBP14.78□□□□□ -0.04
VPS29-201ENST00000360579 CCDC142Q17RM4 750 aa14.78□□□□□ -0.04
VPS29-201ENST00000360579 L1TD1Q5T7N2 865 aaKnown RBP14.78□□□□□ -0.04
VPS29-201ENST00000360579 PROSER1Q86XN7 944 aa14.78□□□□□ -0.04
VPS29-201ENST00000360579 OTUB2Q96DC9 234 aa14.78□□□□□ -0.04
VPS29-201ENST00000360579 SAAL1Q96ER3 474 aa14.78□□□□□ -0.04
VPS29-201ENST00000360579 ANKRD36BP1Q96IX9 119 aa14.78□□□□□ -0.04
VPS29-201ENST00000360579 STRA6Q9BX79 667 aa14.78□□□□□ -0.04
VPS29-201ENST00000360579 SMG1Q96Q15 3661 aaKnown RBP14.78□□□□□ -0.04
VPS29-201ENST00000360579 CACNA1EQ15878 2313 aa14.77□□□□□ -0.04
VPS29-201ENST00000360579 ANTXRLA6NF34 631 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 TAF4O00268 1085 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 HCRTO43612 131 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 ADAM23O75077 832 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 OAS1P00973 400 aaKnown RBP14.77□□□□□ -0.05
VPS29-201ENST00000360579 SYPP08247 313 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 CHRM1P11229 460 aaPredicted RBP14.77□□□□□ -0.05
VPS29-201ENST00000360579 WNT7BP56706 349 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 USP46P62068 366 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 PSMC1P62191 440 aaKnown RBP14.77□□□□□ -0.05
VPS29-201ENST00000360579 CYP27A1Q02318 531 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 SLC14A1Q13336 389 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 ALCAMQ13740 583 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 BTBD8Q5XKL5 378 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 RHBDF2Q6PJF5 856 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 LIMS2Q7Z4I7 341 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 SYCP3Q8IZU3 236 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 FRMD1Q8N878 549 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 MYCBPAPQ8TBZ2 947 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 C8orf48Q96LL4 319 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 SLITRK1Q96PX8 696 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 MTMR12Q9C0I1 747 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 RNF38Q9H0F5 515 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 IKZF4Q9H2S9 585 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 CAPN10Q9HC96 672 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 SMPD4Q9NXE4 827 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 CFAP97Q9P2B7 532 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 SIX4Q9UIU6 781 aa14.77□□□□□ -0.05
VPS29-201ENST00000360579 E2F8A0AVK6 867 aa14.76□□□□□ -0.05
VPS29-201ENST00000360579 TBC1D3BA6NDS4 549 aa14.76□□□□□ -0.05
VPS29-201ENST00000360579 ARHGAP33O14559 1287 aa14.76□□□□□ -0.05
VPS29-201ENST00000360579 KIAA0391O15091 583 aaKnown RBP14.76□□□□□ -0.05
VPS29-201ENST00000360579 ATP2C2O75185 946 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms