RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 MIPOL1Q8TD10 442 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 NT5C1BQ96P26 610 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 FAM129AQ9BZQ8 928 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 MTMR12Q9C0I1 747 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 NACA2Q9H009 215 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 UBE2TQ9NPD8 197 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-203ENST00000354674 CLIC5Q9NZA1 410 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 CNTN3Q9P232 1028 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 AMACRQ9UHK6 382 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 LIN7AO14910 233 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-203ENST00000354674 SART1O43290 800 aaKnown RBP10.6□□□□□ -0.71
SYNE1-203ENST00000354674 SGPL1O95470 568 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 CST3P01034 146 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-203ENST00000354674 NFICP08651 508 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 EPHB2P29323 1055 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 MAGEA1P43355 309 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 NCOA4Q13772 614 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 RAPGEF1Q13905 1077 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 ERMARDQ5T6L9 678 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 C1orf53Q5VUE5 145 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 RAVER1Q8IY67 606 aaKnown RBP10.6□□□□□ -0.71
SYNE1-203ENST00000354674 CEP70Q8NHQ1 597 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 OLIG1Q8TAK6 271 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 SHC3Q92529 594 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 UTP4Q969X6 686 aaKnown RBP10.6□□□□□ -0.71
SYNE1-203ENST00000354674 CLIP3Q96DZ5 547 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 SYT11Q9BT88 431 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 APOBEC3GQ9HC16 384 aaKnown RBP10.6□□□□□ -0.71
SYNE1-203ENST00000354674 KCNK9Q9NPC2 374 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 SNTG2Q9NY99 539 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 NOD1Q9Y239 953 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 C5orf60A6NFR6 353 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 RBAK-RBAKDNI3L0D1 243 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 KCNK3O14649 394 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 ASS1P00966 412 aaKnown RBP10.59□□□□□ -0.71
SYNE1-203ENST00000354674 ANXA13P27216 316 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 PIK3CAP42336 1068 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 MFAP3P55082 362 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 ASIC2Q16515 512 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 PABPC1LQ4VXU2 614 aaKnown RBP10.59□□□□□ -0.71
SYNE1-203ENST00000354674 VSIG1Q86XK7 387 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 ANKRD36BP1Q96IX9 119 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 SLX1AQ9BQ83 275 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 CORO1BQ9BR76 489 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 XYLT2Q9H1B5 865 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 NXF3Q9H4D5 531 aaKnown RBP10.59□□□□□ -0.71
SYNE1-203ENST00000354674 GDF3Q9NR23 364 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 NMRK1Q9NWW6 199 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 SIX4Q9UIU6 781 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 IPPQ9Y573 584 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 FOXN3O00409 490 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-203ENST00000354674 PALMO75781 387 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 OR6B1O95007 311 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 COL6A1P12109 1028 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 SERPINB3P29508 390 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 PDE6CP51160 858 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 LBX1P52954 281 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 BIRC3Q13489 604 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 LLGL1Q15334 1064 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 LRRC36Q1X8D7 754 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 ANKRD33Q7Z3H0 272 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 MRPL10Q7Z7H8 261 aaKnown RBP10.59□□□□□ -0.71
SYNE1-203ENST00000354674 FAM71AQ8IYT1 594 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 C1orf127Q8N9H9 656 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 KAT5Q92993 513 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 ZNF317Q96PQ6 595 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-203ENST00000354674 PI4K2AQ9BTU6 479 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 VRTNQ9H8Y1 702 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 PAIP2BQ9ULR5 123 aaKnown RBP10.59□□□□□ -0.71
SYNE1-203ENST00000354674 PADI3Q9ULW8 664 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 CITO14578 2027 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 H0YGN5 161 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 TNNC2P02585 160 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 TMEM191BP0C7N4 346 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 TPBGLP0DKB5 382 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 KCNE1P15382 129 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 CALB2P22676 271 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 NFKBIAP25963 317 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 CCR3P51677 355 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 TFAMQ00059 246 aaKnown RBP10.59□□□□□ -0.71
SYNE1-203ENST00000354674 SGSM1Q2NKQ1 1148 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 WDR44Q5JSH3 913 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 CFAP157Q5JU67 520 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 C6orf183Q5T699 404 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 ZNF662Q6ZS27 426 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 UBR7Q8N806 425 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 U2AF1L4Q8WU68 220 aaKnown RBP10.59□□□□□ -0.71
SYNE1-203ENST00000354674 TAF4BQ92750 862 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 ARHGEF2Q92974 986 aaKnown RBP10.59□□□□□ -0.71
SYNE1-203ENST00000354674 SIKE1Q9BRV8 207 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.59□□□□□ -0.71
SYNE1-203ENST00000354674 CXCL16Q9H2A7 254 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 PFDN4Q9NQP4 134 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 NENFQ9UMX5 172 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 CNTN6Q9UQ52 1028 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 NFS1Q9Y697 457 aa10.59□□□□□ -0.71
SYNE1-203ENST00000354674 NVLO15381 856 aaKnown RBP10.58□□□□□ -0.72
SYNE1-203ENST00000354674 STAU1O95793 577 aaKnown RBP10.58□□□□□ -0.72
SYNE1-203ENST00000354674 TCP1P17987 556 aaKnown RBP10.58□□□□□ -0.72
SYNE1-203ENST00000354674 CD151P48509 253 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms