RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 RHOT1Q8IXI2 618 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 NIPA2Q8N8Q9 360 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 NDRG1Q92597 394 aaKnown RBP15.43■□□□□ 0.06
CBX3-201ENST00000337620 IGSF21Q96ID5 467 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 RNPC3Q96LT9 517 aaKnown RBP15.43■□□□□ 0.06
CBX3-201ENST00000337620 RC3H2Q9HBD1 1191 aaKnown RBP15.43■□□□□ 0.06
CBX3-201ENST00000337620 VWA8A3KMH1 1905 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 C2CD4BA6NLJ0 364 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 PGRMC1O00264 195 aaKnown RBP15.43■□□□□ 0.06
CBX3-201ENST00000337620 PYGMP11217 842 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 TCF4P15884 667 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 CYP2F1P24903 491 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 EPHB4P54760 987 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 C2orf54Q08AI8 447 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 CMTR2Q8IYT2 770 aaKnown RBP15.43■□□□□ 0.06
CBX3-201ENST00000337620 SPATA4Q8NEY3 305 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 ACTRT1Q8TDG2 376 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 KHSRPQ92945 711 aaKnown RBP eCLIP15.43■□□□□ 0.062e-6■■□□□ 13.8
CBX3-201ENST00000337620 RPGRIP1Q96KN7 1286 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 ZNF558Q96NG5 402 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.43■□□□□ 0.06
CBX3-201ENST00000337620 CSNK1G1Q9HCP0 422 aa15.43■□□□□ 0.06
CBX3-201ENST00000337620 DMAP1Q9NPF5 467 aaPredicted RBP15.43■□□□□ 0.06
CBX3-201ENST00000337620 ABI2Q9NYB9 513 aaPredicted RBP15.43■□□□□ 0.06
CBX3-201ENST00000337620 MRPL42Q9Y6G3 142 aaKnown RBP15.43■□□□□ 0.06
CBX3-201ENST00000337620 COL4A6Q14031 1691 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 OR6C75A6NL08 312 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 H7C4K7 107 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 PSTPIP1O43586 416 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 FGGP02679 453 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 GRIK1P39086 918 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 ZNF143P52747 638 aaPredicted RBP15.42■□□□□ 0.06
CBX3-201ENST00000337620 ZFYVE27Q5T4F4 411 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 SEL1L2Q5TEA6 688 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 TRNP1Q6NT89 227 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 RSRC2Q7L4I2 434 aaKnown RBP15.42■□□□□ 0.06
CBX3-201ENST00000337620 SLC26A9Q7LBE3 791 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 GPRIN1Q7Z2K8 1008 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 RASGEF1CQ8N431 466 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 NOA1Q8NC60 698 aaKnown RBP15.42■□□□□ 0.06
CBX3-201ENST00000337620 FAM149B1Q96BN6 582 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 CFAP57Q96MR6 1250 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 PGLYRP2Q96PD5 576 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 UBXN6Q9BZV1 441 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 ASNSD1Q9NWL6 643 aa15.42■□□□□ 0.06
CBX3-201ENST00000337620 RNF8O76064 485 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 MRPS5P82675 430 aaKnown RBP15.41■□□□□ 0.06
CBX3-201ENST00000337620 NFE2Q16621 373 aaPredicted RBP15.41■□□□□ 0.06
CBX3-201ENST00000337620 CDO1Q16878 200 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 C15orf59Q2T9L4 293 aaPredicted RBP15.41■□□□□ 0.06
CBX3-201ENST00000337620 USP41Q3LFD5 358 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 EFHC1Q5JVL4 640 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 PRSS55Q6UWB4 352 aaPredicted RBP15.41■□□□□ 0.06
CBX3-201ENST00000337620 ANKS3Q6ZW76 656 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 ZNF572Q7Z3I7 529 aaPredicted RBP15.41■□□□□ 0.06
CBX3-201ENST00000337620 CNPY3Q9BT09 278 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 ZBED2Q9BTP6 218 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 ULBP1Q9BZM6 244 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 CXXC1Q9P0U4 656 aaPredicted RBP15.41■□□□□ 0.06
CBX3-201ENST00000337620 ZMYND8Q9ULU4 1186 aaPredicted RBP15.41■□□□□ 0.06
CBX3-201ENST00000337620 HHLA1C9JL84 531 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 LRCH4O75427 683 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 CPB1P15086 417 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 SDC4P31431 198 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 ATP11AP98196 1134 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 ADCY1Q08828 1119 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 LONRF2Q1L5Z9 754 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 ATP13A4Q4VNC1 1196 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 TMEM240Q5SV17 173 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 SH3PXD2AQ5TCZ1 1133 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 KIAA1841Q6NSI8 718 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 RSPO2Q6UXX9 243 aaPredicted RBP15.41■□□□□ 0.06
CBX3-201ENST00000337620 ADAT2Q7Z6V5 191 aaKnown RBP15.41■□□□□ 0.06
CBX3-201ENST00000337620 SCN4BQ8IWT1 228 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 ARFGAP1Q8N6T3 406 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 TMEM169Q96HH4 297 aa15.41■□□□□ 0.06
CBX3-201ENST00000337620 C2CD2LO14523 706 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 FBXO21O94952 628 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 USP17L7P0C7H9 530 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 LAG3P18627 525 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 SCNN1AP37088 669 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 ACAP1Q15027 740 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 LLGL1Q15334 1064 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 ELF2Q15723 593 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 CCDC14Q49A88 953 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 RAB41Q5JT25 222 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 PSRC1Q6PGN9 363 aaPredicted RBP15.4■□□□□ 0.06
CBX3-201ENST00000337620 COLGALT1Q8NBJ5 622 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 RIN2Q8WYP3 895 aaPredicted RBP15.4■□□□□ 0.06
CBX3-201ENST00000337620 PLVAPQ9BX97 442 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 VN1R3Q9BXE9 311 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 AP1M1Q9BXS5 423 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 RBM12Q9NTZ6 932 aaKnown RBP15.4■□□□□ 0.06
CBX3-201ENST00000337620 PCSK1NQ9UHG2 260 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 PCDHB5Q9Y5E4 795 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 KRIT1O00522 736 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 GJB5O95377 273 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 HADHQ16836 314 aaKnown RBP15.4■□□□□ 0.06
CBX3-201ENST00000337620 ODF2Q5BJF6 829 aa15.4■□□□□ 0.06
CBX3-201ENST00000337620 TXNRD3NBQ6F5E7 133 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms