RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 CEP295NLQ96MC4 621 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 C11orf84Q9BUA3 381 aaPredicted RBP15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 MTIF3Q9H2K0 278 aaKnown RBP15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 SPG21Q9NZD8 308 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 INSL6Q9Y581 213 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 USP3Q9Y6I4 520 aa15.68■□□□□ 0.1
CCDC88C-202ENST00000334448 MKI67P46013 3256 aaKnown RBP15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 VWA8A3KMH1 1905 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 TMEM110-MUSTN1A8MSY1 372 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 NT5C1B-RDH14C9J2C7 533 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 KCNK3O14649 394 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 HSF2BPO75031 334 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 SRGAP2O75044 1071 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 TADA3O75528 432 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 PTPN9P43378 593 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 MAP3K7CLP57077 242 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 MRPS5P82675 430 aaKnown RBP15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 DSG1Q02413 1049 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 ADIGQ0VDE8 80 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 DCAF12L1Q5VU92 463 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 PM20D1Q6GTS8 502 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 DDX53Q86TM3 631 aaKnown RBP15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 SPATA2LQ8IUW3 424 aaPredicted RBP15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 HERC6Q8IVU3 1022 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 RHOT1Q8IXI2 618 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 SPPL2BQ8TCT7 592 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 KRT35Q92764 455 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 TMEM169Q96HH4 297 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 C8orf48Q96LL4 319 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 CARD6Q9BX69 1037 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 LRRC4Q9HBW1 653 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 AAASQ9NRG9 546 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 CXXC1Q9P0U4 656 aaPredicted RBP15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 HSFX1Q9UBD0 423 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 PCDHB5Q9Y5E4 795 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 MYH10P35580 1976 aa15.67■□□□□ 0.1
CCDC88C-202ENST00000334448 ZBBXA8MT70 800 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 PDE2AO00408 941 aaPredicted RBP15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 TNFRSF10BO14763 440 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 ZNF185O15231 689 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 DAB1O75553 588 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 GPD1P21695 349 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 BDNFP23560 247 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 PSMA2P25787 234 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 FLT3P36888 993 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 RWDD2BP57060 319 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 DAOAP59103 153 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 SLC39A12Q504Y0 691 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 TRNP1Q6NT89 227 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 TMCO2Q7Z6W1 182 aaPredicted RBP15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 CPNE8Q86YQ8 564 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 SCUBE3Q8IX30 993 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 KATNAL2Q8IYT4 538 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 SIX6OS1Q8N1H7 587 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 SLC2A13Q96QE2 648 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 RAD9AQ99638 391 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 DDX23Q9BUQ8 820 aaKnown RBP15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 PTPRSQ13332 1948 aa15.66■□□□□ 0.1
CCDC88C-202ENST00000334448 NLRC5Q86WI3 1866 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 PTPRDP23468 1912 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 CTAGE15A4D2H0 777 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 EFCAB8A8MWE9 144 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 PGRMC1O00264 195 aaKnown RBP15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 TRIM66O15016 1216 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 LRCH4O75427 683 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 CTAGE8P0CG41 777 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 CXCR5P32302 372 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 MARCKSL1P49006 195 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 TKTL1P51854 596 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 CC2D1AQ6P1N0 951 aaPredicted RBP15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 RSPO2Q6UXX9 243 aaPredicted RBP15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 RSRC2Q7L4I2 434 aaKnown RBP15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 BHLHA9Q7RTU4 235 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 TAS1R1Q7RTX1 841 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 GPRIN1Q7Z2K8 1008 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 BNIPLQ7Z465 357 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 CTAGE6Q86UF2 777 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 CEP57Q86XR8 500 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 CTAGE4Q8IX94 777 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 FIBCD1Q8N539 461 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 EMC1Q8N766 993 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 RXFP2Q8WXD0 754 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 CENPIQ92674 756 aaPredicted RBP15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 NT5C3BQ969T7 300 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 KCNK16Q96T55 309 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 PSMB7Q99436 277 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 TRIM62Q9BVG3 475 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 PLVAPQ9BX97 442 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 IL37Q9NZH6 218 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 SLC4A7Q9Y6M7 1214 aa15.65■□□□□ 0.1
CCDC88C-202ENST00000334448 PATJQ8NI35 1801 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 FAM92AA1XBS5 289 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 MTMR11A4FU01 709 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 F8VP50 259 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 VNN2O95498 520 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 ZBED1O96006 694 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 OR4Q2P0C623 313 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 LCP1P13796 627 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 PDGFRAP16234 1089 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms