RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 EPHB6O15197 1021 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 CYP26A1O43174 497 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 THAP12O43422 761 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 ZNF445P59923 1031 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 POLR2FP61218 127 aaKnown RBP16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 FANCCQ00597 558 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 PDE4CQ08493 712 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 BST2Q10589 180 aaKnown RBP16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 TAF10Q12962 218 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 CNGA2Q16280 664 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 PTPN21Q16825 1174 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 TXNDC8Q6A555 127 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 MTSS1LQ765P7 747 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 RNF214Q8ND24 703 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 FGF14Q92915 247 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 NAP1L5Q96NT1 182 aaPredicted RBP16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 SLITRK1Q96PX8 696 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 TASP1Q9H6P5 420 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 KCNK12Q9HB15 430 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 TRPC7Q9HCX4 862 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 TRPM5Q9NZQ8 1165 aa16.79■□□□□ 0.28
CCDC28A-201ENST00000332797 TTC28Q96AY4 2481 aa16.78■□□□□ 0.28
CCDC28A-201ENST00000332797 A0A1B0GTH6 734 aa16.78■□□□□ 0.28
CCDC28A-201ENST00000332797 ANHXE9PGG2 379 aa16.78■□□□□ 0.28
CCDC28A-201ENST00000332797 PIGZQ86VD9 579 aa16.78■□□□□ 0.28
CCDC28A-201ENST00000332797 MAB21L3Q8N8X9 362 aa16.78■□□□□ 0.28
CCDC28A-201ENST00000332797 SMARCD2Q92925 531 aa16.78■□□□□ 0.28
CCDC28A-201ENST00000332797 ASB16Q96NS5 453 aa16.78■□□□□ 0.28
CCDC28A-201ENST00000332797 KXD1Q9BQD3 176 aa16.78■□□□□ 0.28
CCDC28A-201ENST00000332797 STK33Q9BYT3 514 aa16.78■□□□□ 0.28
CCDC28A-201ENST00000332797 FBXO44Q9H4M3 255 aa16.78■□□□□ 0.28
CCDC28A-201ENST00000332797 NLRC4Q9NPP4 1024 aa16.78■□□□□ 0.28
CCDC28A-201ENST00000332797 COMMD8Q9NX08 183 aa16.78■□□□□ 0.28
CCDC28A-201ENST00000332797 IGSF9Q9P2J2 1179 aa16.78■□□□□ 0.28
CCDC28A-201ENST00000332797 MYO16Q9Y6X6 1858 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 F8VZ95 297 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 TULP2O00295 520 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 XPO1O14980 1071 aaKnown RBP16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 MED7O43513 233 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 ABL1P00519 1130 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 SETSIPP0DME0 302 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 DDX6P26196 483 aaKnown RBP eCLIP16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 PTK2Q05397 1052 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 GPIHBP1Q8IV16 184 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 FAM71AQ8IYT1 594 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 PDZD8Q8NEN9 1154 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 ZNF606Q8WXB4 792 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 KHSRPQ92945 711 aaKnown RBP eCLIP16.77■□□□□ 0.286e-7■■■■□ 21.8
CCDC28A-201ENST00000332797 SECISBP2LQ93073 1101 aaKnown RBP16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 SLC46A2Q9BY10 475 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 IL37Q9NZH6 218 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 GMIPQ9P107 970 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 SORCS3Q9UPU3 1222 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 DAAM1Q9Y4D1 1078 aa16.77■□□□□ 0.28
CCDC28A-201ENST00000332797 ZNF638Q14966 1978 aaKnown RBP16.77■□□□□ 0.27
CCDC28A-201ENST00000332797 DENND4CQ5VZ89 1909 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 C2orf78A6NCI8 922 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 ZNF840PA6NDX5 716 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 FCARP24071 287 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 CLCN1P35523 988 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 AVPR1AP37288 418 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 VIPR2P41587 438 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 PPP3CCP48454 512 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 KIF11P52732 1056 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 PKDCCQ504Y2 493 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 SMYD5Q6GMV2 418 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 TANGO2Q6ICL3 276 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 SLC47A2Q86VL8 602 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 MON1AQ86VX9 555 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 ARID3BQ8IVW6 561 aaPredicted RBP16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 CMTM8Q8IZV2 173 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 OVCA2Q8WZ82 227 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 NXPE3Q969Y0 559 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 SPAG5Q96R06 1193 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 RPP25Q9BUL9 199 aaKnown RBP16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 UBXN6Q9BZV1 441 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 SMG9Q9H0W8 520 aaKnown RBP16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 ZFP14Q9HCL3 533 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 CHORDC1Q9UHD1 332 aaPredicted RBP16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 ZMYM5Q9UJ78 669 aa16.76■□□□□ 0.27
CCDC28A-201ENST00000332797 TRAV19A0A0A6YYK7 116 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 FAM92AA1XBS5 289 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 DCXO43602 365 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 PLA2G4AP47712 749 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 RGS7P49802 495 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 UBASH3AP57075 661 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 JAM2P57087 298 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 BPIFB4P59827 614 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 TDGQ13569 410 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 NR1I3Q14994 352 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 DENND1BQ6P3S1 775 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 NUP210Q8TEM1 1887 aaPredicted RBP16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 ELSPBP1Q96BH3 223 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 SMOC2Q9H3U7 446 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 TRPV4Q9HBA0 871 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 IFNKQ9P0W0 207 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 SCML2Q9UQR0 700 aa16.75■□□□□ 0.27
CCDC28A-201ENST00000332797 DLL1O00548 723 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 DPYSL4O14531 572 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 ECI2O75521 394 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms