RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 CCNT2O60583 730 aaKnown RBP8.09□□□□□ -1.11
SCN9A-201ENST00000303354 JCHAINP01591 159 aa8.09□□□□□ -1.11
SCN9A-201ENST00000303354 NDST1P52848 882 aa8.09□□□□□ -1.11
SCN9A-201ENST00000303354 PTK7Q13308 1070 aa8.09□□□□□ -1.11
SCN9A-201ENST00000303354 KYNUQ16719 465 aa8.09□□□□□ -1.11
SCN9A-201ENST00000303354 OR6K2Q8NGY2 324 aa8.09□□□□□ -1.11
SCN9A-201ENST00000303354 ING5Q8WYH8 240 aa8.09□□□□□ -1.11
SCN9A-201ENST00000303354 RFFLQ8WZ73 363 aa8.09□□□□□ -1.11
SCN9A-201ENST00000303354 ZNHIT2Q9UHR6 403 aa8.09□□□□□ -1.11
SCN9A-201ENST00000303354 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.09□□□□□ -1.11
SCN9A-201ENST00000303354 IGSF9BQ9UPX0 1349 aa8.09□□□□□ -1.11
SCN9A-201ENST00000303354 TCP11X1B4DZS4 312 aa8.09□□□□□ -1.12
SCN9A-201ENST00000303354 ADIGQ0VDE8 80 aa8.09□□□□□ -1.12
SCN9A-201ENST00000303354 ZNF484Q5JVG2 852 aa8.09□□□□□ -1.12
SCN9A-201ENST00000303354 ZNF438Q7Z4V0 828 aa8.09□□□□□ -1.12
SCN9A-201ENST00000303354 GPC2Q8N158 579 aa8.09□□□□□ -1.12
SCN9A-201ENST00000303354 DIS3LQ8TF46 1054 aaKnown RBP8.09□□□□□ -1.12
SCN9A-201ENST00000303354 VPS50Q96JG6 964 aa8.09□□□□□ -1.12
SCN9A-201ENST00000303354 NIF3L1Q9GZT8 377 aa8.09□□□□□ -1.12
SCN9A-201ENST00000303354 IL1RAPL1Q9NZN1 696 aa8.09□□□□□ -1.12
SCN9A-201ENST00000303354 GULP1Q9UBP9 304 aa8.09□□□□□ -1.12
SCN9A-201ENST00000303354 VTI1BQ9UEU0 232 aa8.09□□□□□ -1.12
SCN9A-201ENST00000303354 FAM86B1E9PN63 330 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 CLDN5O00501 218 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 STRNO43815 780 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 AOC2O75106 756 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 CD52P31358 61 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 SRSF11Q05519 484 aaKnown RBP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 POU6F1Q14863 301 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 ALX1Q15699 326 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 ZNF280DQ6N043 979 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 TRIM72Q6ZMU5 477 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 ENOSF1Q7L5Y1 443 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 STK33Q9BYT3 514 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 TRIM4Q9C037 500 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 ZCCHC17Q9NP64 241 aaKnown RBP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 GIMAP4Q9NUV9 329 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 PLK2Q9NYY3 685 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 THEGQ9P2T0 379 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 FAM32AQ9Y421 112 aaKnown RBP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 F8W810 466 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 AMD1P17707 334 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 DPYDQ12882 1025 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 GRB10Q13322 594 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 CCDC81Q6ZN84 652 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 SLFN11Q7Z7L1 901 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 OR10G6Q8NH81 332 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 COL26A1Q96A83 441 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 SYNMO15061 1565 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 PRKAR2AP13861 404 aaKnown RBP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 GUCY2CP25092 1073 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 ACADSBP45954 432 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 GSSP48637 474 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 ACTN3Q08043 901 aaPredicted RBP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 TP53BP2Q13625 1128 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 SPOCD1Q6ZMY3 1216 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 PCDHGA4Q9Y5G9 962 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 O00370 1275 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 SFSWAPQ12872 951 aaKnown RBP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 RGMBQ6NW40 437 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 ZNF579Q8NAF0 562 aaKnown RBP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 PHF21BQ96EK2 531 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 ZDHHC15Q96MV8 337 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 POU1F1P28069 291 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 ITGA8P53708 1063 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 MAP3K10Q02779 954 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 PIGHQ14442 188 aaPredicted RBP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 DDR2Q16832 855 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 RAP1GAP2Q684P5 730 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 HORMAD1Q86X24 394 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 DENND1CQ8IV53 801 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 CENPTQ96BT3 561 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 GPRASP2Q96D09 838 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 TM6SF2Q9BZW4 377 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 PCDHB5Q9Y5E4 795 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 CNTNAP4Q9C0A0 1308 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 VWA5AO00534 786 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 FAM86B2P0C5J1 330 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 MSH3P20585 1137 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 PLA2G4AP47712 749 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 ZNF200P98182 395 aaPredicted RBP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 EXOSC10Q01780 885 aaKnown RBP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 MTSS1LQ765P7 747 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 ARMC2Q8NEN0 867 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 DMAP1Q9NPF5 467 aaPredicted RBP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 AGPAT3Q9NRZ7 376 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 SLC9A8Q9Y2E8 581 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 SMNDC1O75940 238 aaKnown RBP eCLIP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 SKIV2L2P42285 1042 aaKnown RBP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 RGS4P49798 205 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 TAP1Q03518 808 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 EVX2Q03828 476 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 PPATQ06203 517 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 SEMA3FQ13275 785 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 ZC4H2Q9NQZ6 224 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 MIF4GDA9UHW6 222 aaKnown RBP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 MICAL2O94851 1124 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 FXR1P51114 621 aaKnown RBP eCLIP8.08□□□□□ -1.12
SCN9A-201ENST00000303354 CSHL1Q14406 222 aa8.08□□□□□ -1.12
SCN9A-201ENST00000303354 CHI3L2Q15782 390 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms