RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 ZNF840PA6NDX5 716 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 AKAP3O75969 853 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 APBB3O95704 486 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 CYP17A1P05093 508 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 MBL2P11226 248 aaPredicted RBP13.58□□□□□ -0.24
CD44-203ENST00000278386 ATICP31939 592 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 RAP1GAPP47736 663 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 PPP3CCP48454 512 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 DGKEP52429 567 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 CACNA2D1P54289 1103 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 TAF10Q12962 218 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 ELF2Q15723 593 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 KNOP1Q1ED39 458 aaKnown RBP13.58□□□□□ -0.24
CD44-203ENST00000278386 RESP18Q5W5W9 173 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 IL31Q6EBC2 164 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 SYT13Q7L8C5 426 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 FILIP1Q7Z7B0 1213 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 TSTD1Q8NFU3 115 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 CCDC26Q8TAB7 109 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 GOLGA5Q8TBA6 731 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 EZH1Q92800 747 aaPredicted RBP13.58□□□□□ -0.24
CD44-203ENST00000278386 FBXO32Q969P5 355 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 SNX21Q969T3 373 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 LOXL4Q96JB6 756 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 LINC00597Q9H2U6 94 aa13.58□□□□□ -0.24
CD44-203ENST00000278386 PVALEFA0A1B0GWK0 134 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 LRRIQ3A6PVS8 624 aaPredicted RBP13.57□□□□□ -0.24
CD44-203ENST00000278386 STAU1O95793 577 aaKnown RBP13.57□□□□□ -0.24
CD44-203ENST00000278386 OAS1P00973 400 aaKnown RBP13.57□□□□□ -0.24
CD44-203ENST00000278386 GBP1P32455 592 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 MPLP40238 635 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 SLC7A9P82251 487 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 ZXDBP98169 803 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 C2orf27AQ580R0 203 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 ZNF667Q5HYK9 610 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 FAM35AQ86V20 835 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 TTC30AQ86WT1 665 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 DDX42Q86XP3 938 aaKnown RBP eCLIP13.57□□□□□ -0.24
CD44-203ENST00000278386 C12orf56Q8IXR9 622 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 SPRYD3Q8NCJ5 442 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 PDZD8Q8NEN9 1154 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 ZNF516Q92618 1163 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 CNTNAP3BQ96NU0 1288 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 B3GNT5Q9BYG0 378 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 CNTNAP3Q9BZ76 1288 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 TPSD1Q9BZJ3 242 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 SMOC1Q9H4F8 434 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 TMEM30AQ9NV96 361 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 CFAP97Q9P2B7 532 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 SERTAD1Q9UHV2 236 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 CFAP45Q9UL16 551 aa13.57□□□□□ -0.24
CD44-203ENST00000278386 SLC9A3R1O14745 358 aaPredicted RBP13.56□□□□□ -0.24
CD44-203ENST00000278386 RTN3O95197 1032 aaPredicted RBP13.56□□□□□ -0.24
CD44-203ENST00000278386 ADRB1P08588 477 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 FAM163BP0C2L3 166 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 ZNF806P0C7X5 589 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 PDIA4P13667 645 aaKnown RBP13.56□□□□□ -0.24
CD44-203ENST00000278386 YWHAQP27348 245 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 OPRD1P41143 372 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 DNM1Q05193 864 aaKnown RBP13.56□□□□□ -0.24
CD44-203ENST00000278386 NCOA4Q13772 614 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 PLK5Q496M5 336 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 ANO7Q6IWH7 933 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 NUP93Q8N1F7 819 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 PLEKHO2Q8TD55 490 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 ELMO3Q96BJ8 720 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 SMARCD1Q96GM5 515 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 RNF38Q9H0F5 515 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 GZF1Q9H116 711 aaPredicted RBP13.56□□□□□ -0.24
CD44-203ENST00000278386 XYLT2Q9H1B5 865 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 DMAP1Q9NPF5 467 aaPredicted RBP13.56□□□□□ -0.24
CD44-203ENST00000278386 KRT82Q9NSB4 513 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 PCDHGA5Q9Y5G8 931 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 CEP192Q8TEP8 1941 aa13.56□□□□□ -0.24
CD44-203ENST00000278386 MYO18AQ92614 2054 aaKnown RBP13.55□□□□□ -0.24
CD44-203ENST00000278386 ABCA7Q8IZY2 2146 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 PLXND1Q9Y4D7 1925 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 DCLK1O15075 740 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 RHOBTB1O94844 696 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 OLFM2O95897 454 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 ADH1CP00326 375 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 ADH5P11766 374 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 P4HA1P13674 534 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 AP3M2P53677 418 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 SLC5A3P53794 718 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 CDH8P55286 799 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 CREB5Q02930 508 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 KDSRQ06136 332 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 PKP1Q13835 747 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 DHCR24Q15392 516 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 ATL3Q6DD88 541 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 CCDC33Q8N5R6 958 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 KIAA0895Q8NCT3 520 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 USP33Q8TEY7 942 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 DDX1Q92499 740 aaKnown RBP13.55□□□□□ -0.24
CD44-203ENST00000278386 ZC3H10Q96K80 434 aaKnown RBP13.55□□□□□ -0.24
CD44-203ENST00000278386 TNIP3Q96KP6 325 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 NACA2Q9H009 215 aa13.55□□□□□ -0.24
CD44-203ENST00000278386 DUSP15Q9H1R2 295 aaPredicted RBP13.55□□□□□ -0.24
CD44-203ENST00000278386 TNRC6BQ9UPQ9 1833 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms