RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 XPO1O14980 1071 aaKnown RBP13.47□□□□□ -0.25
SS18-202ENST00000269138 RTN3O95197 1032 aaPredicted RBP13.47□□□□□ -0.25
SS18-202ENST00000269138 LAMP2P13473 410 aa13.47□□□□□ -0.25
SS18-202ENST00000269138 YWHAQP27348 245 aa13.47□□□□□ -0.25
SS18-202ENST00000269138 STAT1P42224 750 aa13.47□□□□□ -0.25
SS18-202ENST00000269138 PGFP49763 221 aa13.47□□□□□ -0.25
SS18-202ENST00000269138 RGS7P49802 495 aa13.47□□□□□ -0.25
SS18-202ENST00000269138 STILQ15468 1287 aa13.47□□□□□ -0.25
SS18-202ENST00000269138 TAF3Q5VWG9 929 aa13.47□□□□□ -0.25
SS18-202ENST00000269138 CACNA2D4Q7Z3S7 1137 aa13.47□□□□□ -0.25
SS18-202ENST00000269138 NOP9Q86U38 636 aaKnown RBP13.47□□□□□ -0.25
SS18-202ENST00000269138 TDRD5Q8NAT2 981 aaKnown RBP13.47□□□□□ -0.25
SS18-202ENST00000269138 SLC35F5Q8WV83 523 aa13.47□□□□□ -0.25
SS18-202ENST00000269138 UBXN6Q9BZV1 441 aa13.47□□□□□ -0.25
SS18-202ENST00000269138 TTYH3Q9C0H2 523 aa13.47□□□□□ -0.25
SS18-202ENST00000269138 LIMD1Q9UGP4 676 aa13.47□□□□□ -0.25
SS18-202ENST00000269138 CHORDC1Q9UHD1 332 aaPredicted RBP13.47□□□□□ -0.25
SS18-202ENST00000269138 NR2E1Q9Y466 385 aa13.47□□□□□ -0.25
SS18-202ENST00000269138 DENND4AQ7Z401 1863 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 PIK3R2O00459 728 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 MED7O43513 233 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 FGF19O95750 216 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 SETSIPP0DME0 302 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 CYP11B1P15538 503 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 CDC25CP30307 473 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 GPD2P43304 727 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 KIF11P52732 1056 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 BPIFB4P59827 614 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 ARID5AQ03989 594 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 GPR158Q5T848 1215 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 TXNDC8Q6A555 127 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 SMYD5Q6GMV2 418 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 PMF1Q6P1K2 205 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 PASD1Q8IV76 773 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 WDTC1Q8N5D0 677 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 SLC20A1Q8WUM9 679 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 DDX1Q92499 740 aaKnown RBP13.46□□□□□ -0.25
SS18-202ENST00000269138 NDRG1Q92597 394 aaKnown RBP13.46□□□□□ -0.25
SS18-202ENST00000269138 FBXO32Q969P5 355 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 ACSF2Q96CM8 615 aaPredicted RBP13.46□□□□□ -0.25
SS18-202ENST00000269138 SLC46A2Q9BY10 475 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 PNPLA8Q9NP80 782 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 GMIPQ9P107 970 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 EPS15L1Q9UBC2 864 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 UXTQ9UBK9 157 aaPredicted RBP13.46□□□□□ -0.25
SS18-202ENST00000269138 CYTH4Q9UIA0 394 aa13.46□□□□□ -0.25
SS18-202ENST00000269138 FAM170AA1A519 330 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 FAM92AA1XBS5 289 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 ZNF840PA6NDX5 716 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 CBFA2T2O43439 604 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 CHRNB2P17787 502 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 PLA2G4AP47712 749 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 SLC8A3P57103 927 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 RAB41Q5JT25 222 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 ZDHHC14Q8IZN3 488 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 EPS8L1Q8TE68 723 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 CPLX3Q8WVH0 158 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 GCNAQ96QF7 691 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 ANP32EQ9BTT0 268 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 SLITRK6Q9H5Y7 841 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 COMMD8Q9NX08 183 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 GDE1Q9NZC3 331 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 TRPM5Q9NZQ8 1165 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 NOCTQ9UK39 431 aaKnown RBP13.45□□□□□ -0.26
SS18-202ENST00000269138 PCDHGC3Q9UN70 934 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 USP3Q9Y6I4 520 aa13.45□□□□□ -0.26
SS18-202ENST00000269138 C2orf78A6NCI8 922 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 LRRC53A6NM62 1247 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 ABL1P00519 1130 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 TPM3P06753 285 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 ASGR2P07307 311 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 MMEP08473 750 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 USP17L7P0C7H9 530 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 LCP1P13796 627 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 KRT9P35527 623 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 TKTL1P51854 596 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 ARHGAP15Q53QZ3 475 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 FAM78AQ5JUQ0 283 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 E4F1Q66K89 784 aaPredicted RBP13.44□□□□□ -0.26
SS18-202ENST00000269138 SARM1Q6SZW1 724 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 PARM1Q6UWI2 310 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 MON1AQ86VX9 555 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 GJD3Q8N144 294 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 MAB21L3Q8N8X9 362 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 RSAD2Q8WXG1 361 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 KCTD13Q8WZ19 329 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 MRPS31Q92665 395 aaKnown RBP13.44□□□□□ -0.26
SS18-202ENST00000269138 SLITRK1Q96PX8 696 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 SLC22A12Q96S37 553 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 CYP2S1Q96SQ9 504 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 UHRF1Q96T88 793 aaPredicted RBP13.44□□□□□ -0.26
SS18-202ENST00000269138 RPP25Q9BUL9 199 aaKnown RBP13.44□□□□□ -0.26
SS18-202ENST00000269138 ULBP1Q9BZM6 244 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 SMG9Q9H0W8 520 aaKnown RBP13.44□□□□□ -0.26
SS18-202ENST00000269138 FBXO44Q9H4M3 255 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 TASP1Q9H6P5 420 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 LRRC4Q9HBW1 653 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 TRPC7Q9HCX4 862 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 EHD2Q9NZN4 543 aa13.44□□□□□ -0.26
SS18-202ENST00000269138 SCML2Q9UQR0 700 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms