RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 PKP3Q9Y446 797 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 COPG1Q9Y678 874 aaKnown RBP8.13□□□□□ -1.11
USP3-201ENST00000268049 A0A1B0GW55 424 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 A0A1W2PQ27 194 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 A0A1W2PQ64 194 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 A0A1W2PQD8 194 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 SOWAHDA6NJG2 315 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 DFFAO00273 331 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 CFLARO15519 480 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 HAUS5O94927 633 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 BMP10O95393 424 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 DUX4L2P0CJ85 424 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 DUX4L3P0CJ86 424 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 DUX4L4P0CJ87 422 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 DUX4L5P0CJ88 424 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 DUX4L6P0CJ89 424 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 DUX4L7P0CJ90 424 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 STAT4Q14765 748 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 GLE1Q53GS7 698 aaKnown RBP8.13□□□□□ -1.11
USP3-201ENST00000268049 FAM47EQ6ZV65 393 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 METTL3Q86U44 580 aaKnown RBP8.13□□□□□ -1.11
USP3-201ENST00000268049 PALB2Q86YC2 1186 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 LRRC71Q8N4P6 559 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 LINC00301Q8NCQ3 95 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 MCUQ8NE86 351 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 CXorf40AQ8TE69 158 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 MAGOHBQ96A72 148 aaKnown RBP8.13□□□□□ -1.11
USP3-201ENST00000268049 NUSAP1Q9BXS6 441 aaKnown RBP8.13□□□□□ -1.11
USP3-201ENST00000268049 TRIM55Q9BYV6 548 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.13□□□□□ -1.11
USP3-201ENST00000268049 DUX4Q9UBX2 424 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 TEKT2Q9UIF3 430 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 LNPEPQ9UIQ6 1025 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 CYB561D2O14569 222 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 PPP1R37O75864 691 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 GUCY1A2P33402 732 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 TWF1Q12792 350 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 ATG16L1Q676U5 607 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 CHRDL2Q6WN34 429 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 SYTL1Q8IYJ3 562 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 ZNF483Q8TF39 744 aaPredicted RBP8.13□□□□□ -1.11
USP3-201ENST00000268049 ZNF473Q8WTR7 871 aaKnown RBP8.13□□□□□ -1.11
USP3-201ENST00000268049 C6orf203Q9P0P8 240 aaPredicted RBP8.13□□□□□ -1.11
USP3-201ENST00000268049 NDOR1Q9UHB4 597 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 MCM8Q9UJA3 840 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 DNPEPQ9ULA0 475 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 C10orf71Q711Q0 1435 aa8.13□□□□□ -1.11
USP3-201ENST00000268049 RGPD2P0DJD1 1756 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 A0A0G2JND7 137 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 RHOCP08134 193 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 KRT39Q6A163 491 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 CDKL3Q8IVW4 592 aaPredicted RBP8.12□□□□□ -1.11
USP3-201ENST00000268049 VSTM4Q8IW00 320 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 CLYBLQ8N0X4 340 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 STRADBQ9C0K7 418 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 KDM4CQ9H3R0 1056 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 UNC45AQ9H3U1 944 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 CYP26B1Q9NR63 512 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 TBK1Q9UHD2 729 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 VPS9D1Q9Y2B5 631 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 ABRAQ8N0Z2 381 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 RFWD2Q8NHY2 731 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 ATP6V1G3Q96LB4 118 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 TSPAN18Q96SJ8 248 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 GPR63Q9BZJ6 419 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 ZFP14Q9HCL3 533 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 SUN2Q9UH99 717 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 VPS28Q9UK41 221 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 DNAJC12Q9UKB3 198 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 CDY2AQ9Y6F7 541 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 ASTN2O75129 1339 aaPredicted RBP8.12□□□□□ -1.11
USP3-201ENST00000268049 CNTNAP5Q8WYK1 1306 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 CCDC189A1A4V9 331 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 SGK1O00141 431 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 TREHO43280 583 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 MYBP10242 640 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 CXCR5P32302 372 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 NOS2P35228 1153 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 CHKAP35790 457 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 MAGOHP61326 146 aaKnown RBP8.12□□□□□ -1.11
USP3-201ENST00000268049 SPARCL1Q14515 664 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 PSMD5Q16401 504 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 IMPG1Q17R60 797 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 TRIM16LQ309B1 348 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 DDHD1Q8NEL9 900 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 PHF20Q9BVI0 1012 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 KLC2Q9H0B6 622 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 TMEM117Q9H0C3 514 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 WDR41Q9HAD4 459 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 STMN3Q9NZ72 180 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 ZFATQ9P243 1243 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 STX18Q9P2W9 335 aaKnown RBP8.12□□□□□ -1.11
USP3-201ENST00000268049 PTPN22Q9Y2R2 807 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 PTCH2Q9Y6C5 1203 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 CD2BP2O95400 341 aaKnown RBP8.12□□□□□ -1.11
USP3-201ENST00000268049 SYPP08247 313 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 WEE1P30291 646 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 RGS4P49798 205 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 NDUFA8P51970 172 aa8.12□□□□□ -1.11
USP3-201ENST00000268049 ERVK-21P61565 698 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms