RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 KPNA6O60684 536 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 GRAP2O75791 330 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 FAM107AO95990 144 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 IFNB1P01574 187 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 APOC2P02655 101 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 CD48P09326 243 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 HOXC8P31273 242 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 GNL1P36915 607 aaPredicted RBP13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 MAGEA4P43358 317 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 TAF6P49848 677 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 SEC24CP53992 1094 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 TAF5Q15542 800 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 C15orf59Q2T9L4 293 aaPredicted RBP13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 SV2CQ496J9 727 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 TRNP1Q6NT89 227 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 TAF2Q6P1X5 1199 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 OLFML1Q6UWY5 402 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 MYCBPAPQ8TBZ2 947 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 RSAD2Q8WXG1 361 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 PIWIL1Q96J94 861 aaKnown RBP13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 PEBP4Q96S96 227 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 NCAPGQ9BPX3 1015 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 SNX25Q9H3E2 840 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 NMRK2Q9NPI5 230 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 RNF19AQ9NV58 838 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 SAE1Q9UBE0 346 aaPredicted RBP13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 SHOC2Q9UQ13 582 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 RRP15Q9Y3B9 282 aaKnown RBP13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 IPPQ9Y573 584 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 NME7Q9Y5B8 376 aa13.55□□□□□ -0.24
SPTLC1-201ENST00000262554 TULP2O00295 520 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 MAP3K13O43283 966 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 TCEA3O75764 348 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 IGHA2P01877 340 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 SDC4P31431 198 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 PSEN1P49768 467 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 CDH6P55285 790 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 PPARDQ03181 441 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 PDE4CQ08493 712 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 BST2Q10589 180 aaKnown RBP13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 TFDP2Q14188 446 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 CDO1Q16878 200 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 FAM47CQ5HY64 1035 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 RNASEH2BQ5TBB1 312 aaKnown RBP13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 SH3PXD2AQ5TCZ1 1133 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 TWF2Q6IBS0 349 aaKnown RBP13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 SRLQ86TD4 932 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 MAP7D3Q8IWC1 876 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 CRYBG2Q8N1P7 616 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 APPL2Q8NEU8 664 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 ZNF473Q8WTR7 871 aaKnown RBP13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 C9orf72Q96LT7 481 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 CFAP57Q96MR6 1250 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 TTC25Q96NG3 672 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 FAM107BQ9H098 131 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 DPEP3Q9H4B8 488 aa13.54□□□□□ -0.24
SPTLC1-201ENST00000262554 M0QZ92 97 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 MCF2LO15068 1137 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 HUS1O60921 280 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 DUSP11O75319 330 aaKnown RBP13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 ENDOD1O94919 500 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 ABHD2P08910 425 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 PDGFRBP09619 1106 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 C6orf222P0C671 652 aaPredicted RBP13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 PECAM1P16284 738 aaPredicted RBP13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 BCAT1P54687 386 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 EIF3EP60228 445 aaKnown RBP13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 ATP11AP98196 1134 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 KRT81Q14533 505 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 STAT4Q14765 748 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 PDK2Q15119 407 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 CCDC14Q49A88 953 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 BOLA3Q53S33 107 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 SPATS2Q86XZ4 545 aaKnown RBP13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 SCUBE3Q8IX30 993 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 ANKRD52Q8NB46 1076 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 MDM1Q8TC05 714 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 KBTBD7Q8WVZ9 684 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 SAYSD1Q9NPB0 183 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 SRCAPQ6ZRS2 3230 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 A0A087WUV0 522 aaPredicted RBP13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 SLC10A3P09131 477 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 CHN1P15882 459 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 ADORA2BP29275 332 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 PSMC4P43686 418 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 ERMARDQ5T6L9 678 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 SCYL2Q6P3W7 929 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 CYP4V2Q6ZWL3 525 aaPredicted RBP13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 SAPCD2Q86UD0 394 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 SMG8Q8ND04 991 aaKnown RBP13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 FAM172AQ8WUF8 416 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 TEKT4Q8WW24 435 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 XPO6Q96QU8 1125 aaKnown RBP13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 NGRNQ9NPE2 291 aaKnown RBP13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 CYLDQ9NQC7 956 aa13.53□□□□□ -0.24
SPTLC1-201ENST00000262554 SPTLC1O15269 473 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 PAPSS1O43252 624 aaPredicted RBP13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 FGFR1P11362 822 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms