RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 TRIM49CP0CI26 452 aa23.53■■□□□ 1.36
VTI1B-201ENST00000216456 PGFP49763 221 aa23.53■■□□□ 1.36
VTI1B-201ENST00000216456 DPYDQ12882 1025 aa23.53■■□□□ 1.36
VTI1B-201ENST00000216456 ZACNQ401N2 412 aa23.53■■□□□ 1.36
VTI1B-201ENST00000216456 SV2AQ7L0J3 742 aa23.53■■□□□ 1.36
VTI1B-201ENST00000216456 SFTPA1Q8IWL2 248 aa23.53■■□□□ 1.36
VTI1B-201ENST00000216456 HHIPQ96QV1 700 aa23.53■■□□□ 1.36
VTI1B-201ENST00000216456 MED10Q9BTT4 135 aa23.53■■□□□ 1.36
VTI1B-201ENST00000216456 CHORDC1Q9UHD1 332 aaPredicted RBP23.53■■□□□ 1.36
VTI1B-201ENST00000216456 GMEB2Q9UKD1 530 aa23.53■■□□□ 1.36
VTI1B-201ENST00000216456 DYNC1LI1Q9Y6G9 523 aaKnown RBP23.53■■□□□ 1.36
VTI1B-201ENST00000216456 OAS1P00973 400 aaKnown RBP23.52■■□□□ 1.36
VTI1B-201ENST00000216456 MESP2Q0VG99 397 aa23.52■■□□□ 1.36
VTI1B-201ENST00000216456 KRBA2Q6ZNG9 492 aa23.52■■□□□ 1.36
VTI1B-201ENST00000216456 FILIP1Q7Z7B0 1213 aa23.52■■□□□ 1.36
VTI1B-201ENST00000216456 SMYD4Q8IYR2 804 aaPredicted RBP23.52■■□□□ 1.36
VTI1B-201ENST00000216456 FUKQ8N0W3 1084 aa23.52■■□□□ 1.36
VTI1B-201ENST00000216456 ZMIZ2Q8NF64 920 aa23.52■■□□□ 1.36
VTI1B-201ENST00000216456 RPLP0P6Q8NHW5 317 aa23.52■■□□□ 1.36
VTI1B-201ENST00000216456 CD101Q93033 1021 aa23.52■■□□□ 1.36
VTI1B-201ENST00000216456 ATP2A3Q93084 1043 aa23.52■■□□□ 1.36
VTI1B-201ENST00000216456 EEF2KMTQ96G04 330 aa23.52■■□□□ 1.36
VTI1B-201ENST00000216456 DLL3Q9NYJ7 618 aa23.52■■□□□ 1.36
VTI1B-201ENST00000216456 USP25Q9UHP3 1055 aa23.52■■□□□ 1.36
VTI1B-201ENST00000216456 RAB23Q9ULC3 237 aa23.52■■□□□ 1.36
VTI1B-201ENST00000216456 CACNA1AO00555 2505 aa23.52■■□□□ 1.35
VTI1B-201ENST00000216456 AKAP3O75969 853 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 OLFM2O95897 454 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 HLA-DRAP01903 254 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 OPRD1P41143 372 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 NDST1P52848 882 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 SLC7A9P82251 487 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 LAIR1Q6GTX8 287 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 DGLUCYQ7Z3D6 616 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 WDR5BQ86VZ2 330 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 NUP93Q8N1F7 819 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 FAM160A2Q8N612 972 aaPredicted RBP23.51■■□□□ 1.35
VTI1B-201ENST00000216456 C12orf29Q8N999 325 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 FBXO32Q969P5 355 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 WBP2Q969T9 261 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 TWNKQ96RR1 684 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 SMOQ99835 787 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 MMRN2Q9H8L6 949 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 APOBEC3GQ9HC16 384 aaKnown RBP23.51■■□□□ 1.35
VTI1B-201ENST00000216456 KRT82Q9NSB4 513 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 FAM49BQ9NUQ9 324 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 CFAP97Q9P2B7 532 aa23.51■■□□□ 1.35
VTI1B-201ENST00000216456 HELZP42694 1942 aaKnown RBP23.51■■□□□ 1.35
VTI1B-201ENST00000216456 TNFRSF10BO14763 440 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 RHOBTB3O94955 611 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 TCF3P15923 654 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 YWHAQP27348 245 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 ASPAP45381 313 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 GCLMP48507 274 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 SEC13P55735 322 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 PPP3CAQ08209 521 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 CCDC6Q16204 474 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 CEP68Q76N32 757 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 ERMP1Q7Z2K6 904 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 TMC2Q8TDI7 906 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 TMEM174Q8WUU8 243 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 SECISBP2LQ93073 1101 aaKnown RBP23.5■■□□□ 1.35
VTI1B-201ENST00000216456 CEP295NLQ96MC4 621 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 GMIPQ9P107 970 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 TRAF3IP3Q9Y228 551 aa23.5■■□□□ 1.35
VTI1B-201ENST00000216456 SDK1Q7Z5N4 2213 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 COCHO43405 550 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 AP1G2O75843 785 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 ASS1P00966 412 aaKnown RBP23.49■■□□□ 1.35
VTI1B-201ENST00000216456 CYP17A1P05093 508 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 MBL2P11226 248 aaPredicted RBP23.49■■□□□ 1.35
VTI1B-201ENST00000216456 DRD1P21728 446 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 NR2F2P24468 414 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 PIK3CAP42336 1068 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 SLC6A11P48066 632 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 VAMP7P51809 220 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 AP3M2P53677 418 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 SLC5A3P53794 718 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 PUM1Q14671 1186 aaKnown RBP eCLIP23.49■■□□□ 1.351e-6■□□□□ 9.7
VTI1B-201ENST00000216456 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.49■■□□□ 1.35
VTI1B-201ENST00000216456 C12orf40Q86WS4 652 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 SLC2A14Q8TDB8 520 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 TAS1R2Q8TE23 839 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 SLITRK1Q96PX8 696 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 CCSER2Q9H7U1 834 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 SLC8A2Q9UPR5 921 aa23.49■■□□□ 1.35
VTI1B-201ENST00000216456 CALUO43852 315 aaPredicted RBP23.48■■□□□ 1.35
VTI1B-201ENST00000216456 ZNF202O95125 648 aa23.48■■□□□ 1.35
VTI1B-201ENST00000216456 RETP07949 1114 aa23.48■■□□□ 1.35
VTI1B-201ENST00000216456 HOXA6P31267 233 aa23.48■■□□□ 1.35
VTI1B-201ENST00000216456 ATXN1P54253 815 aaKnown RBP23.48■■□□□ 1.35
VTI1B-201ENST00000216456 SGSM1Q2NKQ1 1148 aa23.48■■□□□ 1.35
VTI1B-201ENST00000216456 GPRIN1Q7Z2K8 1008 aa23.48■■□□□ 1.35
VTI1B-201ENST00000216456 KBTBD6Q86V97 674 aa23.48■■□□□ 1.35
VTI1B-201ENST00000216456 JAKMIP2Q96AA8 810 aa23.48■■□□□ 1.35
VTI1B-201ENST00000216456 ZFRQ96KR1 1074 aaKnown RBP23.48■■□□□ 1.35
VTI1B-201ENST00000216456 FRMD4BQ9Y2L6 1034 aa23.48■■□□□ 1.35
VTI1B-201ENST00000216456 A0A1W2PQ27 194 aa23.47■■□□□ 1.35
VTI1B-201ENST00000216456 A0A1W2PQ64 194 aa23.47■■□□□ 1.35
VTI1B-201ENST00000216456 A0A1W2PQD8 194 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms