RNA–Protein interactions for RNA: YPL139C

UME1, Transcript of Component of both the Rpd3S and Rpd3L histone deacetylase complexes, yeast

Gene UME1, Length 1,383 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UME1	YPL139C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.96	□□□□□ -1.62	not detected
UME1	YPL139C	YLR118C	Q12354	227 aa		4.96	□□□□□ -1.62
UME1	YPL139C	YIR021W-A	Q3E739	70 aa		4.96	□□□□□ -1.62
UME1	YPL139C	YNR034W-A	Q3E841	98 aa		4.96	□□□□□ -1.62
UME1	YPL139C	SAL1	D6W196	494 aa		4.95	□□□□□ -1.62
UME1	YPL139C	UGX2	P32772	223 aa		4.95	□□□□□ -1.62
UME1	YPL139C	SDS23	P53172	527 aa		4.95	□□□□□ -1.62
UME1	YPL139C	HMRA1	P0CY11	126 aa		4.94	□□□□□ -1.62
UME1	YPL139C	VMA21	P41806	77 aa		4.94	□□□□□ -1.62
UME1	YPL139C	GLC8	P41818	229 aa		4.94	□□□□□ -1.62
UME1	YPL139C	YJL028W	P47062	111 aa		4.94	□□□□□ -1.62
UME1	YPL139C	YOP1	Q12402	180 aa		4.93	□□□□□ -1.62
UME1	YPL139C	RTC6	O14464	93 aa		4.92	□□□□□ -1.62
UME1	YPL139C	RPL23A	P0CX41	137 aa	Known RBP	4.92	□□□□□ -1.62
UME1	YPL139C	RPL23B	P0CX42	137 aa	Known RBP	4.92	□□□□□ -1.62
UME1	YPL139C	FCF1	Q05498	189 aa	Predicted RBP	4.92	□□□□□ -1.62
UME1	YPL139C	YMR122W-A	Q3E842	84 aa		4.92	□□□□□ -1.62
UME1	YPL139C	ADH3	P07246	375 aa	Known RBP	4.91	□□□□□ -1.62
UME1	YPL139C	CNB1	P25296	175 aa		4.91	□□□□□ -1.62
UME1	YPL139C	ATG8	P38182	117 aa	RIP-Chip data	4.91	□□□□□ -1.62	not detected
UME1	YPL139C	SVP26	P38869	228 aa		4.91	□□□□□ -1.62
UME1	YPL139C	HSP10	P38910	106 aa		4.91	□□□□□ -1.62
UME1	YPL139C	TEM1	P38987	245 aa		4.91	□□□□□ -1.62
UME1	YPL139C	PAU7	P39545	55 aa		4.91	□□□□□ -1.62
UME1	YPL139C	ARC15	P40518	154 aa	RIP-Chip data	4.91	□□□□□ -1.62	not detected
UME1	YPL139C	PAU5	P43575	122 aa		4.91	□□□□□ -1.62
UME1	YPL139C	DCV1	P43595	202 aa		4.91	□□□□□ -1.62
UME1	YPL139C	DAN1	P47178	298 aa		4.91	□□□□□ -1.62
UME1	YPL139C	YGL088W	P53151	121 aa		4.91	□□□□□ -1.62
UME1	YPL139C	PMP3	P87284	55 aa		4.91	□□□□□ -1.62
UME1	YPL139C	TVP18	Q04767	167 aa		4.91	□□□□□ -1.62
UME1	YPL139C	YCR024C-B	Q3E7Z8	88 aa		4.91	□□□□□ -1.62
UME1	YPL139C	IGO2	Q9P305	131 aa		4.91	□□□□□ -1.62
UME1	YPL139C	MRPL24	P36525	258 aa	Predicted RBP	4.91	□□□□□ -1.62
UME1	YPL139C	APS2	Q00381	147 aa		4.91	□□□□□ -1.62
UME1	YPL139C	YMR320W	Q04897	101 aa		4.91	□□□□□ -1.62
UME1	YPL139C	FSF1	Q12029	327 aa	Known RBP	4.91	□□□□□ -1.62
UME1	YPL139C	RPL42A	P0CX27	106 aa	Known RBP	4.9	□□□□□ -1.63
UME1	YPL139C	RPL42B	P0CX28	106 aa	Known RBP	4.9	□□□□□ -1.63
UME1	YPL139C	SPT4	P32914	102 aa	Predicted RBP	4.9	□□□□□ -1.63
UME1	YPL139C	YBR013C	P38215	129 aa		4.9	□□□□□ -1.63
UME1	YPL139C	ZEO1	Q08245	113 aa		4.9	□□□□□ -1.63
UME1	YPL139C	YPL229W	Q99395	206 aa		4.9	□□□□□ -1.63
UME1	YPL139C	SEC4	P07560	215 aa	Known RBP	4.89	□□□□□ -1.63
UME1	YPL139C	PAU15	P40585	124 aa		4.89	□□□□□ -1.63
UME1	YPL139C	RPL16A	P26784	199 aa	Known RBP	4.88	□□□□□ -1.63
UME1	YPL139C	MRP49	P32388	137 aa		4.88	□□□□□ -1.63
UME1	YPL139C	YBL081W	P38180	368 aa	Known RBP	4.88	□□□□□ -1.63
UME1	YPL139C	YIL059C	P40520	121 aa		4.88	□□□□□ -1.63
UME1	YPL139C	ERI1	P62651	68 aa	Known RBP	4.88	□□□□□ -1.63
UME1	YPL139C	PRE1	P22141	198 aa	Known RBP	4.87	□□□□□ -1.63
UME1	YPL139C	HAC1	P41546	238 aa		4.87	□□□□□ -1.63
UME1	YPL139C	YBR209W	P38311	105 aa		4.86	□□□□□ -1.63
UME1	YPL139C	YJR146W	P47174	117 aa		4.86	□□□□□ -1.63
UME1	YPL139C	POR1	P04840	283 aa	Known RBP	4.85	□□□□□ -1.63
UME1	YPL139C	YBR219C	P38317	127 aa		4.85	□□□□□ -1.63
UME1	YPL139C	NSE4	P43124	402 aa		4.85	□□□□□ -1.63
UME1	YPL139C	YIL014C-A	Q02598	104 aa		4.85	□□□□□ -1.63
UME1	YPL139C	YPL257W	Q08974	193 aa		4.85	□□□□□ -1.63
UME1	YPL139C	YDR034C-A	P0C289	58 aa		4.84	□□□□□ -1.63
UME1	YPL139C	PEX22	P39718	180 aa		4.84	□□□□□ -1.63
UME1	YPL139C	YNL184C	P53876	108 aa		4.84	□□□□□ -1.63
UME1	YPL139C	MGR2	Q02889	113 aa		4.84	□□□□□ -1.63
UME1	YPL139C	YDL085C-A	Q3E7B7	68 aa	Known RBP	4.84	□□□□□ -1.63
UME1	YPL139C	AQY1	P0CD91	305 aa		4.83	□□□□□ -1.64
UME1	YPL139C	CNL1	Q06333	122 aa		4.83	□□□□□ -1.64
UME1	YPL139C	YPR014C	Q6B0W2	109 aa		4.83	□□□□□ -1.64
UME1	YPL139C	YAR023C	D6VPM8	179 aa		4.82	□□□□□ -1.64
UME1	YPL139C	PFY1	P07274	126 aa		4.82	□□□□□ -1.64
UME1	YPL139C	PBI2	P0CT04	75 aa	Known RBP	4.82	□□□□□ -1.64
UME1	YPL139C	SMP1	P38128	452 aa		4.82	□□□□□ -1.64
UME1	YPL139C	YAL064W	P39711	94 aa		4.82	□□□□□ -1.64
UME1	YPL139C	BET5	Q03630	159 aa		4.82	□□□□□ -1.64
UME1	YPL139C	YPR010C-A	A5Z2X5	72 aa		4.81	□□□□□ -1.64
UME1	YPL139C	YKR070W	P36151	352 aa	Known RBP	4.81	□□□□□ -1.64
UME1	YPL139C	YEL008W	P40001	126 aa		4.81	□□□□□ -1.64
UME1	YPL139C	YLR194C	Q05777	254 aa		4.8	□□□□□ -1.64
UME1	YPL139C	PAU19	P0CE85	124 aa		4.79	□□□□□ -1.64
UME1	YPL139C	PAU21	P0CE86	164 aa		4.79	□□□□□ -1.64
UME1	YPL139C	PAU22	P0CE87	164 aa		4.79	□□□□□ -1.64
UME1	YPL139C	PAU3	P25610	124 aa		4.79	□□□□□ -1.64
UME1	YPL139C	HHO1	P53551	258 aa		4.79	□□□□□ -1.64
UME1	YPL139C	COF1	Q03048	143 aa	Known RBP	4.79	□□□□□ -1.64
UME1	YPL139C	RPS22B	Q3E7Y3	130 aa	Known RBP	4.79	□□□□□ -1.64
UME1	YPL139C	TRP1	P00912	224 aa		4.78	□□□□□ -1.64
UME1	YPL139C	LSM8	P47093	109 aa	Known RBP	4.78	□□□□□ -1.64
UME1	YPL139C	TOS6	P48560	102 aa		4.78	□□□□□ -1.64
UME1	YPL139C	SHH4	Q06236	168 aa		4.78	□□□□□ -1.64
UME1	YPL139C	APS1	P35181	156 aa		4.77	□□□□□ -1.65
UME1	YPL139C	RPC10	P40422	70 aa		4.77	□□□□□ -1.65
UME1	YPL139C	CYT2	Q00873	224 aa		4.77	□□□□□ -1.65
UME1	YPL139C	HMRA2	P0CY13	119 aa		4.76	□□□□□ -1.65
UME1	YPL139C	RPF1	P38805	295 aa	Known RBP	4.76	□□□□□ -1.65
UME1	YPL139C	OST2	P46964	130 aa		4.76	□□□□□ -1.65
UME1	YPL139C	YMR295C	Q03559	197 aa		4.76	□□□□□ -1.65
UME1	YPL139C	YDR029W	Q12111	104 aa		4.76	□□□□□ -1.65
UME1	YPL139C	DFM1	Q12743	341 aa	Known RBP	4.76	□□□□□ -1.65
UME1	YPL139C	COA3	Q3E7B2	85 aa		4.76	□□□□□ -1.65
UME1	YPL139C	YOR008C-A	Q3E7B9	74 aa		4.75	□□□□□ -1.65
UME1	YPL139C	YLR307C-A	Q3E825	87 aa		4.75	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 40.7 ms