RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W COA3Q3E7B2 85 aa4.39□□□□□ -1.71
ATG4YNL223W YOR008C-AQ3E7B9 74 aa4.39□□□□□ -1.71
ATG4YNL223W RPL16AP26784 199 aaKnown RBP4.38□□□□□ -1.71
ATG4YNL223W YNL217WP40152 326 aa4.38□□□□□ -1.71
ATG4YNL223W YLR281CQ05863 155 aa4.38□□□□□ -1.71
ATG4YNL223W YCR001WP25347 104 aa4.37□□□□□ -1.71
ATG4YNL223W YKL070WP36087 169 aa4.37□□□□□ -1.71
ATG4YNL223W NRG2P38082 220 aa4.37□□□□□ -1.71
ATG4YNL223W KRE9P39005 276 aa4.37□□□□□ -1.71
ATG4YNL223W YJR146WP47174 117 aa4.37□□□□□ -1.71
ATG4YNL223W PAU23Q07987 124 aa4.37□□□□□ -1.71
ATG4YNL223W PAU17Q12370 124 aa4.37□□□□□ -1.71
ATG4YNL223W YBR126W-AQ8TGU7 68 aa4.37□□□□□ -1.71
ATG4YNL223W YKL044WP36092 106 aa4.37□□□□□ -1.71
ATG4YNL223W URM1P40554 99 aaPredicted RBP4.37□□□□□ -1.71
ATG4YNL223W YCR075W-AQ3E830 75 aa4.37□□□□□ -1.71
ATG4YNL223W UBC5P15732 148 aa4.36□□□□□ -1.71
ATG4YNL223W VAM10Q08474 114 aa4.36□□□□□ -1.71
ATG4YNL223W TRP1P00912 224 aa4.35□□□□□ -1.71
ATG4YNL223W PMP3P87284 55 aa4.35□□□□□ -1.71
ATG4YNL223W DFM1Q12743 341 aaKnown RBP4.35□□□□□ -1.71
ATG4YNL223W YGR240C-AQ3E786 66 aa4.35□□□□□ -1.71
ATG4YNL223W ADH2P00331 348 aaKnown RBP4.34□□□□□ -1.71
ATG4YNL223W YDL022C-AP0C5L6 82 aa4.34□□□□□ -1.71
ATG4YNL223W YPT53P36019 220 aa4.34□□□□□ -1.71
ATG4YNL223W GLC8P41818 229 aa4.34□□□□□ -1.71
ATG4YNL223W RPL31AP0C2H8 113 aaKnown RBP4.33□□□□□ -1.72
ATG4YNL223W MRP49P32388 137 aa4.33□□□□□ -1.72
ATG4YNL223W AIM29P36154 155 aa4.33□□□□□ -1.72
ATG4YNL223W YBR209WP38311 105 aa4.33□□□□□ -1.72
ATG4YNL223W YGL088WP53151 121 aa4.33□□□□□ -1.72
ATG4YNL223W YPL261CQ08976 102 aa4.33□□□□□ -1.72
ATG4YNL223W ATP15P21306 62 aa4.32□□□□□ -1.72
ATG4YNL223W YPL073CP40323 161 aa4.32□□□□□ -1.72
ATG4YNL223W AIM11P87275 137 aa4.32□□□□□ -1.72
ATG4YNL223W SGF11Q03067 99 aa4.32□□□□□ -1.72
ATG4YNL223W SCW10Q04951 389 aa4.32□□□□□ -1.72
ATG4YNL223W MHR1Q06630 226 aa4.32□□□□□ -1.72
ATG4YNL223W RDS3Q06835 107 aaPredicted RBP4.32□□□□□ -1.72
ATG4YNL223W UTP20P35194 2493 aaKnown RBP4.32□□□□□ -1.72
ATG4YNL223W HAP3P13434 144 aa4.31□□□□□ -1.72
ATG4YNL223W RPL32P38061 130 aaKnown RBP4.31□□□□□ -1.72
ATG4YNL223W YEL067CP39978 195 aa4.31□□□□□ -1.72
ATG4YNL223W YEL008WP40001 126 aa4.31□□□□□ -1.72
ATG4YNL223W ARC15P40518 154 aaRIP-Chip data4.31□□□□□ -1.72not detected
ATG4YNL223W YIL059CP40520 121 aa4.31□□□□□ -1.72
ATG4YNL223W RPS8AP0CX39 200 aaKnown RBP4.3□□□□□ -1.72
ATG4YNL223W RPS8BP0CX40 200 aaKnown RBP4.3□□□□□ -1.72
ATG4YNL223W AUA1P32450 94 aa4.3□□□□□ -1.72
ATG4YNL223W YKR041WP36134 250 aa4.3□□□□□ -1.72
ATG4YNL223W YMR122W-AQ3E842 84 aa4.3□□□□□ -1.72
ATG4YNL223W YNR077CP53758 84 aa4.3□□□□□ -1.72
ATG4YNL223W YLR194CQ05777 254 aa4.3□□□□□ -1.72
ATG4YNL223W CRC1Q12289 327 aa4.3□□□□□ -1.72
ATG4YNL223W YLR363W-AQ3E747 85 aa4.3□□□□□ -1.72
ATG4YNL223W YCL021W-AQ96VH3 125 aa4.3□□□□□ -1.72
ATG4YNL223W RPF1P38805 295 aaKnown RBP4.29□□□□□ -1.72
ATG4YNL223W HAL1Q01766 294 aa4.29□□□□□ -1.72
ATG4YNL223W YER085CP40058 173 aa4.28□□□□□ -1.72
ATG4YNL223W ERI1P62651 68 aaKnown RBP4.28□□□□□ -1.72
ATG4YNL223W CWC27Q02770 301 aa4.28□□□□□ -1.72
ATG4YNL223W VTC1P40046 129 aaRIP-Chip data4.27□□□□□ -1.73not detected
ATG4YNL223W CIN5P40917 295 aa4.27□□□□□ -1.73
ATG4YNL223W IGO2Q9P305 131 aa4.27□□□□□ -1.73
ATG4YNL223W RPL18AP0CX49 186 aaKnown RBP4.26□□□□□ -1.73
ATG4YNL223W RPL18BP0CX50 186 aaKnown RBP4.26□□□□□ -1.73
ATG4YNL223W YBR219CP38317 127 aa4.26□□□□□ -1.73
ATG4YNL223W SHU1P38751 150 aa4.26□□□□□ -1.73
ATG4YNL223W PEX17P40155 199 aa4.26□□□□□ -1.73
ATG4YNL223W MRPS12P53732 153 aa4.26□□□□□ -1.73
ATG4YNL223W YML079WQ03629 201 aa4.26□□□□□ -1.73
ATG4YNL223W YRA2P36036 203 aaKnown RBP RIP-Chip data4.25□□□□□ -1.73not detected
ATG4YNL223W UIP3P39547 235 aa4.25□□□□□ -1.73
ATG4YNL223W YAR029WP39549 74 aa4.25□□□□□ -1.73
ATG4YNL223W OXA1P39952 402 aa4.25□□□□□ -1.73
ATG4YNL223W YFR057WP43625 151 aa4.25□□□□□ -1.73
ATG4YNL223W ELC1Q03071 99 aa4.25□□□□□ -1.73
ATG4YNL223W YMR295CQ03559 197 aa4.25□□□□□ -1.73
ATG4YNL223W RPL28P02406 149 aaKnown RBP4.24□□□□□ -1.73
ATG4YNL223W MBF1O14467 151 aaKnown RBP4.24□□□□□ -1.73
ATG4YNL223W YPR170W-BP0C5R9 85 aa4.24□□□□□ -1.73
ATG4YNL223W ERG28P40030 148 aa4.24□□□□□ -1.73
ATG4YNL223W RPL33AP05744 107 aaKnown RBP4.23□□□□□ -1.73
ATG4YNL223W QCR8P08525 94 aa4.23□□□□□ -1.73
ATG4YNL223W RPL33BP41056 107 aaKnown RBP4.23□□□□□ -1.73
ATG4YNL223W SPC1P46965 94 aa4.23□□□□□ -1.73
ATG4YNL223W YNL190WP53872 204 aa4.23□□□□□ -1.73
ATG4YNL223W ENV10Q99382 181 aa4.23□□□□□ -1.73
ATG4YNL223W UGX2P32772 223 aa4.22□□□□□ -1.73
ATG4YNL223W COX14P39103 70 aa4.22□□□□□ -1.73
ATG4YNL223W YMR320WQ04897 101 aa4.22□□□□□ -1.73
ATG4YNL223W YLR296WQ05898 108 aa4.22□□□□□ -1.73
ATG4YNL223W YKL023C-AQ2V2P3 75 aa4.22□□□□□ -1.73
ATG4YNL223W YPR010C-AA5Z2X5 72 aa4.21□□□□□ -1.74
ATG4YNL223W YLL066W-BQ8TGJ7 56 aa4.21□□□□□ -1.74
ATG4YNL223W ADH1P00330 348 aaKnown RBP4.2□□□□□ -1.74
ATG4YNL223W TOA2P32774 122 aa4.2□□□□□ -1.74
ATG4YNL223W YER181CP40097 107 aa4.2□□□□□ -1.74
ATG4YNL223W YDR115WQ04598 105 aa4.2□□□□□ -1.74
ATG4YNL223W PPT2Q12036 173 aa4.2□□□□□ -1.74
Retrieved 100 of 5,963 RNA–protein pairs in 65.8 ms