RNA–Protein interactions for RNA: YDR337W

MRPS28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene MRPS28, Length 861 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MRPS28	YDR337W	SAE3	P89114	91 aa		4.95	□□□□□ -1.62
MRPS28	YDR337W	YMR103C	Q04436	120 aa		4.95	□□□□□ -1.62
MRPS28	YDR337W	RDS3	Q06835	107 aa	Predicted RBP	4.95	□□□□□ -1.62
MRPS28	YDR337W	VAM10	Q08474	114 aa		4.95	□□□□□ -1.62
MRPS28	YDR337W	YDL157C	Q12082	118 aa		4.95	□□□□□ -1.62
MRPS28	YDR337W	YLR112W	Q12130	139 aa		4.95	□□□□□ -1.62
MRPS28	YDR337W	LSO2	Q3E772	92 aa	Known RBP	4.95	□□□□□ -1.62
MRPS28	YDR337W	ATP5	P09457	212 aa		4.94	□□□□□ -1.62
MRPS28	YDR337W	YBR209W	P38311	105 aa		4.94	□□□□□ -1.62
MRPS28	YDR337W	YJR146W	P47174	117 aa		4.94	□□□□□ -1.62
MRPS28	YDR337W	YGL088W	P53151	121 aa		4.94	□□□□□ -1.62
MRPS28	YDR337W	SGF11	Q03067	99 aa		4.94	□□□□□ -1.62
MRPS28	YDR337W	BET5	Q03630	159 aa		4.94	□□□□□ -1.62
MRPS28	YDR337W	COA3	Q3E7B2	85 aa		4.94	□□□□□ -1.62
MRPS28	YDR337W	YCR007C	P25354	239 aa		4.93	□□□□□ -1.62
MRPS28	YDR337W	RPL16A	P26784	199 aa	Known RBP	4.93	□□□□□ -1.62
MRPS28	YDR337W	URM1	P40554	99 aa	Predicted RBP	4.93	□□□□□ -1.62
MRPS28	YDR337W	YGR240C-A	Q3E786	66 aa		4.93	□□□□□ -1.62
MRPS28	YDR337W	ADH2	P00331	348 aa	Known RBP	4.92	□□□□□ -1.62
MRPS28	YDR337W	RPL31A	P0C2H8	113 aa	Known RBP	4.92	□□□□□ -1.62
MRPS28	YDR337W	UBC5	P15732	148 aa		4.92	□□□□□ -1.62
MRPS28	YDR337W	AIM29	P36154	155 aa		4.92	□□□□□ -1.62
MRPS28	YDR337W	HAL1	Q01766	294 aa		4.92	□□□□□ -1.62
MRPS28	YDR337W	YPL261C	Q08976	102 aa		4.92	□□□□□ -1.62
MRPS28	YDR337W	YDL085C-A	Q3E7B7	68 aa	Known RBP	4.92	□□□□□ -1.62
MRPS28	YDR337W	TRP1	P00912	224 aa		4.91	□□□□□ -1.62
MRPS28	YDR337W	AUA1	P32450	94 aa		4.91	□□□□□ -1.62
MRPS28	YDR337W	YKL070W	P36087	169 aa		4.91	□□□□□ -1.62
MRPS28	YDR337W	YIL059C	P40520	121 aa		4.91	□□□□□ -1.62
MRPS28	YDR337W	SCW10	Q04951	389 aa		4.91	□□□□□ -1.62
MRPS28	YDR337W	ATP15	P21306	62 aa		4.9	□□□□□ -1.63
MRPS28	YDR337W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.9	□□□□□ -1.63	not detected
MRPS28	YDR337W	CRC1	Q12289	327 aa		4.9	□□□□□ -1.63
MRPS28	YDR337W	YKL044W	P36092	106 aa		4.89	□□□□□ -1.63
MRPS28	YDR337W	DFM1	Q12743	341 aa	Known RBP	4.89	□□□□□ -1.63
MRPS28	YDR337W	YCL021W-A	Q96VH3	125 aa		4.89	□□□□□ -1.63
MRPS28	YDR337W	YEL008W	P40001	126 aa		4.88	□□□□□ -1.63
MRPS28	YDR337W	YER085C	P40058	173 aa		4.88	□□□□□ -1.63
MRPS28	YDR337W	ARC15	P40518	154 aa	RIP-Chip data	4.88	□□□□□ -1.63	not detected
MRPS28	YDR337W	YDL022C-A	P0C5L6	82 aa		4.87	□□□□□ -1.63
MRPS28	YDR337W	MRP49	P32388	137 aa		4.87	□□□□□ -1.63
MRPS28	YDR337W	YPL073C	P40323	161 aa		4.87	□□□□□ -1.63
MRPS28	YDR337W	GLC8	P41818	229 aa		4.87	□□□□□ -1.63
MRPS28	YDR337W	AIM11	P87275	137 aa		4.87	□□□□□ -1.63
MRPS28	YDR337W	PAU23	Q07987	124 aa		4.87	□□□□□ -1.63
MRPS28	YDR337W	PAU17	Q12370	124 aa		4.87	□□□□□ -1.63
MRPS28	YDR337W	RPL32	P38061	130 aa	Known RBP	4.86	□□□□□ -1.63
MRPS28	YDR337W	YMR122W-A	Q3E842	84 aa		4.86	□□□□□ -1.63
MRPS28	YDR337W	YKR041W	P36134	250 aa		4.85	□□□□□ -1.63
MRPS28	YDR337W	RPF1	P38805	295 aa	Known RBP	4.85	□□□□□ -1.63
MRPS28	YDR337W	RPS8A	P0CX39	200 aa	Known RBP	4.84	□□□□□ -1.63
MRPS28	YDR337W	RPS8B	P0CX40	200 aa	Known RBP	4.84	□□□□□ -1.63
MRPS28	YDR337W	ERI1	P62651	68 aa	Known RBP	4.84	□□□□□ -1.63
MRPS28	YDR337W	HAP3	P13434	144 aa		4.83	□□□□□ -1.64
MRPS28	YDR337W	YEL067C	P39978	195 aa		4.83	□□□□□ -1.64
MRPS28	YDR337W	CIN5	P40917	295 aa		4.83	□□□□□ -1.64
MRPS28	YDR337W	YFR057W	P43625	151 aa		4.83	□□□□□ -1.64
MRPS28	YDR337W	YMR295C	Q03559	197 aa		4.83	□□□□□ -1.64
MRPS28	YDR337W	SHU1	P38751	150 aa		4.82	□□□□□ -1.64
MRPS28	YDR337W	SPC1	P46965	94 aa		4.82	□□□□□ -1.64
MRPS28	YDR337W	YNR077C	P53758	84 aa		4.82	□□□□□ -1.64
MRPS28	YDR337W	DIF1	O13577	133 aa		4.81	□□□□□ -1.64
MRPS28	YDR337W	RPL18A	P0CX49	186 aa	Known RBP	4.81	□□□□□ -1.64
MRPS28	YDR337W	RPL18B	P0CX50	186 aa	Known RBP	4.81	□□□□□ -1.64
MRPS28	YDR337W	PEX17	P40155	199 aa		4.81	□□□□□ -1.64
MRPS28	YDR337W	RPR2	P40571	144 aa		4.81	□□□□□ -1.64
MRPS28	YDR337W	YMR320W	Q04897	101 aa		4.81	□□□□□ -1.64
MRPS28	YDR337W	YLR194C	Q05777	254 aa		4.81	□□□□□ -1.64
MRPS28	YDR337W	IGO2	Q9P305	131 aa		4.81	□□□□□ -1.64
MRPS28	YDR337W	RPL33A	P05744	107 aa	Known RBP	4.8	□□□□□ -1.64
MRPS28	YDR337W	YBR219C	P38317	127 aa		4.8	□□□□□ -1.64
MRPS28	YDR337W	ERG28	P40030	148 aa		4.8	□□□□□ -1.64
MRPS28	YDR337W	VTC1	P40046	129 aa	RIP-Chip data	4.8	□□□□□ -1.64	not detected
MRPS28	YDR337W	RPL33B	P41056	107 aa	Known RBP	4.8	□□□□□ -1.64
MRPS28	YDR337W	MRPS12	P53732	153 aa		4.8	□□□□□ -1.64
MRPS28	YDR337W	ELC1	Q03071	99 aa		4.8	□□□□□ -1.64
MRPS28	YDR337W	MHR1	Q06630	226 aa		4.8	□□□□□ -1.64
MRPS28	YDR337W	YLR363W-A	Q3E747	85 aa		4.8	□□□□□ -1.64
MRPS28	YDR337W	RPL28	P02406	149 aa	Known RBP	4.79	□□□□□ -1.64
MRPS28	YDR337W	SVP26	P38869	228 aa		4.79	□□□□□ -1.64
MRPS28	YDR337W	OXA1	P39952	402 aa		4.79	□□□□□ -1.64
MRPS28	YDR337W	CWC27	Q02770	301 aa		4.79	□□□□□ -1.64
MRPS28	YDR337W	PBA1	Q05778	276 aa		4.79	□□□□□ -1.64
MRPS28	YDR337W	CDC43	P18898	376 aa		4.78	□□□□□ -1.64
MRPS28	YDR337W	YAR029W	P39549	74 aa		4.78	□□□□□ -1.64
MRPS28	YDR337W	YML079W	Q03629	201 aa		4.78	□□□□□ -1.64
MRPS28	YDR337W	YLL066W-B	Q8TGJ7	56 aa		4.78	□□□□□ -1.64
MRPS28	YDR337W	ENV10	Q99382	181 aa		4.78	□□□□□ -1.64
MRPS28	YDR337W	YPR010C-A	A5Z2X5	72 aa		4.77	□□□□□ -1.65
MRPS28	YDR337W	UGX2	P32772	223 aa		4.77	□□□□□ -1.65
MRPS28	YDR337W	MID2	P36027	376 aa		4.77	□□□□□ -1.65
MRPS28	YDR337W	YNL190W	P53872	204 aa		4.77	□□□□□ -1.65
MRPS28	YDR337W	RRT15	Q3E811	62 aa		4.77	□□□□□ -1.65
MRPS28	YDR337W	RTC6	O14464	93 aa		4.76	□□□□□ -1.65
MRPS28	YDR337W	QCR8	P08525	94 aa		4.76	□□□□□ -1.65
MRPS28	YDR337W	COX14	P39103	70 aa		4.76	□□□□□ -1.65
MRPS28	YDR337W	RPC10	P40422	70 aa		4.75	□□□□□ -1.65
MRPS28	YDR337W	ADH1	P00330	348 aa	Known RBP	4.74	□□□□□ -1.65
MRPS28	YDR337W	UIP3	P39547	235 aa		4.74	□□□□□ -1.65
MRPS28	YDR337W	YAL064W	P39711	94 aa		4.74	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 22.7 ms