RNA–Protein interactions for RNA: YDR171W

HSP42, Transcript of Small heat shock protein (sHSP) with chaperone activity, yeast

Gene HSP42, Length 1,128 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HSP42	YDR171W	HMRA2	P0CY13	119 aa		3.21	□□□□□ -1.9
HSP42	YDR171W	RRT1	P38192	103 aa		3.21	□□□□□ -1.9
HSP42	YDR171W	YEL067C	P39978	195 aa		3.21	□□□□□ -1.9
HSP42	YDR171W	SPI1	P40092	148 aa		3.21	□□□□□ -1.9
HSP42	YDR171W	ECO1	P43605	281 aa		3.21	□□□□□ -1.9
HSP42	YDR171W	FIP1	P45976	327 aa		3.21	□□□□□ -1.9
HSP42	YDR171W	SKI6	P46948	246 aa	Predicted RBP	3.21	□□□□□ -1.9
HSP42	YDR171W	IMP2	P46972	177 aa		3.21	□□□□□ -1.9
HSP42	YDR171W	LCB3	P47013	409 aa		3.21	□□□□□ -1.9
HSP42	YDR171W	FCY1	Q12178	158 aa		3.21	□□□□□ -1.9
HSP42	YDR171W	TIM22	Q12328	207 aa		3.21	□□□□□ -1.9
HSP42	YDR171W	ENV10	Q99382	181 aa		3.21	□□□□□ -1.9
HSP42	YDR171W	CCW14	O13547	238 aa		3.2	□□□□□ -1.9
HSP42	YDR171W	Q0255	P03881	472 aa		3.2	□□□□□ -1.9
HSP42	YDR171W	YHR213W	P0CI67	198 aa		3.2	□□□□□ -1.9
HSP42	YDR171W	VMA11	P32842	164 aa		3.2	□□□□□ -1.9
HSP42	YDR171W	MRPL49	P40858	161 aa	Predicted RBP	3.2	□□□□□ -1.9
HSP42	YDR171W	YFR057W	P43625	151 aa		3.2	□□□□□ -1.9
HSP42	YDR171W	YLR194C	Q05777	254 aa		3.2	□□□□□ -1.9
HSP42	YDR171W	RNH203	Q12338	110 aa		3.2	□□□□□ -1.9
HSP42	YDR171W	YDR119W-A	Q2V2P9	66 aa		3.2	□□□□□ -1.9
HSP42	YDR171W	YDL022C-A	P0C5L6	82 aa		3.19	□□□□□ -1.9
HSP42	YDR171W	PHO85	P17157	305 aa		3.19	□□□□□ -1.9
HSP42	YDR171W	KTI12	P34253	313 aa	Known RBP	3.19	□□□□□ -1.9
HSP42	YDR171W	SIP18	P50263	79 aa		3.19	□□□□□ -1.9
HSP42	YDR171W	YGR039W	P53225	103 aa		3.19	□□□□□ -1.9
HSP42	YDR171W	YPL229W	Q99395	206 aa		3.19	□□□□□ -1.9
HSP42	YDR171W	MIC12	P38341	106 aa		3.18	□□□□□ -1.9
HSP42	YDR171W	YHL042W	P38729	150 aa		3.18	□□□□□ -1.9
HSP42	YDR171W	GLE2	P40066	365 aa		3.18	□□□□□ -1.9
HSP42	YDR171W	YIL059C	P40520	121 aa		3.18	□□□□□ -1.9
HSP42	YDR171W	YCH1	P42937	148 aa		3.18	□□□□□ -1.9
HSP42	YDR171W	CWP2	P43497	92 aa		3.18	□□□□□ -1.9
HSP42	YDR171W	YFL051C	P43552	160 aa		3.18	□□□□□ -1.9
HSP42	YDR171W	PIR5	P46999	287 aa		3.18	□□□□□ -1.9
HSP42	YDR171W	SBH2	P52871	88 aa		3.18	□□□□□ -1.9
HSP42	YDR171W	CAX4	P53223	239 aa		3.18	□□□□□ -1.9
HSP42	YDR171W	AIM11	P87275	137 aa		3.18	□□□□□ -1.9
HSP42	YDR171W	COF1	Q03048	143 aa	Known RBP	3.18	□□□□□ -1.9
HSP42	YDR171W	YDR114C	Q04597	100 aa		3.18	□□□□□ -1.9
HSP42	YDR171W	YOR008C-A	Q3E7B9	74 aa		3.18	□□□□□ -1.9
HSP42	YDR171W	ECM12	O13529	151 aa		3.17	□□□□□ -1.9
HSP42	YDR171W	YHR139C-A	O13536	103 aa		3.17	□□□□□ -1.9
HSP42	YDR171W	MID2	P36027	376 aa		3.17	□□□□□ -1.9
HSP42	YDR171W	NRG2	P38082	220 aa		3.17	□□□□□ -1.9
HSP42	YDR171W	DSE2	P38844	325 aa		3.17	□□□□□ -1.9
HSP42	YDR171W	VTC1	P40046	129 aa	RIP-Chip data	3.17	□□□□□ -1.9	not detected
HSP42	YDR171W	YIA6	P40556	373 aa		3.17	□□□□□ -1.9
HSP42	YDR171W	SHH4	Q06236	168 aa		3.17	□□□□□ -1.9
HSP42	YDR171W	YBL112C	Q3E7Y4	105 aa		3.17	□□□□□ -1.9
HSP42	YDR171W	TOM6	P33448	61 aa		3.16	□□□□□ -1.9
HSP42	YDR171W	MIG3	P39943	394 aa		3.16	□□□□□ -1.9
HSP42	YDR171W	PEX17	P40155	199 aa		3.16	□□□□□ -1.9
HSP42	YDR171W	YJL027C	P47063	138 aa	Predicted RBP	3.16	□□□□□ -1.9
HSP42	YDR171W	VPS55	P47111	140 aa		3.16	□□□□□ -1.9
HSP42	YDR171W	YDR381C-A	Q3E6R5	114 aa		3.16	□□□□□ -1.9
HSP42	YDR171W	YMR105W-A	Q8TGS8	64 aa		3.16	□□□□□ -1.9
HSP42	YDR171W	RPS23A	P0CX29	145 aa	Known RBP	3.15	□□□□□ -1.91
HSP42	YDR171W	RPS23B	P0CX30	145 aa		3.15	□□□□□ -1.91
HSP42	YDR171W	UBC5	P15732	148 aa		3.15	□□□□□ -1.91
HSP42	YDR171W	UTH1	P36135	365 aa		3.15	□□□□□ -1.91
HSP42	YDR171W	YKR045C	P36138	183 aa		3.15	□□□□□ -1.91
HSP42	YDR171W	SMP1	P38128	452 aa		3.15	□□□□□ -1.91
HSP42	YDR171W	AIM34	Q03673	198 aa		3.15	□□□□□ -1.91
HSP42	YDR171W	YPL038W-A	Q3E7B4	63 aa		3.15	□□□□□ -1.91
HSP42	YDR171W	YER039C-A	P0CD97	72 aa		3.14	□□□□□ -1.91
HSP42	YDR171W	PBI2	P0CT04	75 aa	Known RBP	3.14	□□□□□ -1.91
HSP42	YDR171W	INO2	P26798	304 aa		3.14	□□□□□ -1.91
HSP42	YDR171W	AIM19	P40502	157 aa		3.14	□□□□□ -1.91
HSP42	YDR171W	KNH1	P50112	268 aa		3.14	□□□□□ -1.91
HSP42	YDR171W	HAL1	Q01766	294 aa		3.14	□□□□□ -1.91
HSP42	YDR171W	YDR209C	Q03480	137 aa		3.14	□□□□□ -1.91
HSP42	YDR171W	IRC23	Q08416	157 aa		3.14	□□□□□ -1.91
HSP42	YDR171W	YDR029W	Q12111	104 aa		3.14	□□□□□ -1.91
HSP42	YDR171W	RPL28	P02406	149 aa	Known RBP	3.13	□□□□□ -1.91
HSP42	YDR171W	YBR121C-A	P0C5L4	52 aa		3.13	□□□□□ -1.91
HSP42	YDR171W	ATP15	P21306	62 aa		3.13	□□□□□ -1.91
HSP42	YDR171W	YER121W	P40076	114 aa		3.13	□□□□□ -1.91
HSP42	YDR171W	DCV1	P43595	202 aa		3.13	□□□□□ -1.91
HSP42	YDR171W	SBH1	P52870	82 aa		3.13	□□□□□ -1.91
HSP42	YDR171W	YGR219W	P53307	113 aa		3.13	□□□□□ -1.91
HSP42	YDR171W	MRPS12	P53732	153 aa		3.13	□□□□□ -1.91
HSP42	YDR171W	GAT3	Q07928	141 aa		3.13	□□□□□ -1.91
HSP42	YDR171W	YOR029W	Q12243	111 aa		3.13	□□□□□ -1.91
HSP42	YDR171W	PRM7	Q12459	698 aa		3.13	□□□□□ -1.91
HSP42	YDR171W	URA2	P07259	2214 aa	Known RBP	3.12	□□□□□ -1.91
HSP42	YDR171W	RPL39	P04650	51 aa		3.12	□□□□□ -1.91
HSP42	YDR171W	RPS28B	P0C0X0	67 aa	Known RBP	3.12	□□□□□ -1.91
HSP42	YDR171W	RPL18A	P0CX49	186 aa	Known RBP	3.12	□□□□□ -1.91
HSP42	YDR171W	RPL18B	P0CX50	186 aa	Known RBP	3.12	□□□□□ -1.91
HSP42	YDR171W	MRPL38	P35996	138 aa	Predicted RBP	3.12	□□□□□ -1.91
HSP42	YDR171W	MSA2	P36157	363 aa		3.12	□□□□□ -1.91
HSP42	YDR171W	MPC2	P38857	129 aa		3.12	□□□□□ -1.91
HSP42	YDR171W	POR2	P40478	281 aa		3.12	□□□□□ -1.91
HSP42	YDR171W	YJR146W	P47174	117 aa		3.12	□□□□□ -1.91
HSP42	YDR171W	YOL160W	Q08321	113 aa		3.12	□□□□□ -1.91
HSP42	YDR171W	EMC6	Q12431	108 aa		3.12	□□□□□ -1.91
HSP42	YDR171W	RPS28A	Q3E7X9	67 aa	Predicted RBP	3.12	□□□□□ -1.91
HSP42	YDR171W	QCR8	P08525	94 aa		3.11	□□□□□ -1.91
HSP42	YDR171W	RPL2A	P0CX45	254 aa	Known RBP	3.11	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms