RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 BMI1P35226 326 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 SERPINB6P35237 376 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CLK3P49761 638 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 SCN1BQ07699 218 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 AOC3Q16853 763 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 MIS18BP1Q6P0N0 1132 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CD302Q8IX05 232 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 HDAC7Q8WUI4 952 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 TMEM79Q9BSE2 394 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 MARCH7Q9H992 704 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 POLE3Q9NRF9 147 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 NOSIPQ9Y314 301 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 COMMD3-BMI1R4GMX3 469 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 A0A0U1RQK1 487 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 C17orf113A0A1B0GUU1 675 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF320A2RRD8 509 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 LRRC14BA6NHZ5 514 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 MYO1GB0I1T2 1018 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 GJB3O75712 270 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 GNRH1P01148 92 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ALDH18A1P54886 795 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF445P59923 1031 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CYP4F2P78329 520 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 MRPS25P82663 173 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF267Q14586 743 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 MAPRE2Q15555 327 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 PLEKHO1Q53GL0 409 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 XKR9Q5GH70 373 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CRELD1Q96HD1 420 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 MAGED4Q96JG8 741 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 SORBS1Q9BX66 1292 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CRLF2Q9HC73 371 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 TONSLQ96HA7 1378 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 PPIP5K2O43314 1243 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 PTPN9P43378 593 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ARFIP1P53367 373 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 FUT2Q10981 343 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ILF3Q12906 894 aaKnown RBP eCLIP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 KDM7AQ6ZMT4 941 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF598Q86UK7 904 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CCDC28AQ8IWP9 274 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 SRBD1Q8N5C6 995 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 RIN2Q8WYP3 895 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 GHITMQ9H3K2 345 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 AAASQ9NRG9 546 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 TOPORSQ9NS56 1045 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 STAP2Q9UGK3 403 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 DYRK1BQ9Y463 629 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 PIPSLA2A3N6 862 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 HAT1O14929 419 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ADCY6O43306 1168 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ONECUT3O60422 494 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 MITFO75030 526 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 GABBR2O75899 941 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 RPS17P08708 135 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ZBTB48P10074 688 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 WARSP23381 471 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 SLC1A1P43005 524 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ADKP55263 362 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 THOC5Q13769 683 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 FAM209AQ5JX71 171 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 LIN9Q5TKA1 542 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 FAM178BQ8IXR5 827 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CNTD1Q8N815 330 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 LINGO1Q96FE5 620 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ACE2Q9BYF1 805 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 FNIP2Q9P278 1114 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 RGS17Q9UGC6 210 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 TRAF3IP3Q9Y228 551 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 TIMM22Q9Y584 194 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 PCDHGA8Q9Y5G5 932 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 MINK1Q8N4C8 1332 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 AP2A1O95782 977 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ODC1P11926 461 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 NPR2P20594 1047 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 GABREP78334 506 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF227Q86WZ6 799 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SCUBE1Q8IWY4 988 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 OR7G1Q8NGA0 311 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 NGLY1Q96IV0 654 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 LURAP1Q96LR2 239 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 P2RX7Q99572 595 aaKnown RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SPACA1Q9HBV2 294 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 RMND1Q9NWS8 449 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 DOLKQ9UPQ8 538 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 TLR2O60603 784 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 OR7A10O76100 309 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 GNAO1P09471 354 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 BTBD16Q32M84 506 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ACCSLQ4AC99 568 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 RPS26P11Q5JNZ5 115 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 GAS2L3Q86XJ1 694 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 MCATQ8IVS2 390 aaKnown RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 TPCN2Q8NHX9 752 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 PRR7Q8TB68 274 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 NANPQ8TBE9 248 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 LOC100653049A0A140TA62 436 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 KRT34O76011 436 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 FANCCQ00597 558 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SWI5Q1ZZU3 235 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms