RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 RBMS3Q6XE24 437 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 LIX1LQ8IVB5 337 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 SLC44A2Q8IWA5 706 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 POMGNT2Q8NAT1 580 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 RDM1Q8NG50 284 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 RIPOR3Q96MK2 946 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CCDC85AQ96PX6 553 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 LARP6Q9BRS8 491 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PABPC3Q9H361 631 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MRPL44Q9H9J2 332 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CHMP1AQ9HD42 196 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PCDHA12Q9UN75 941 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 R3HDM2Q9Y2K5 976 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TBX22Q9Y458 520 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 WDR91A4D1P6 747 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 USP17L3A6NCW0 530 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 USP17L4A6NCW7 530 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 DDTLA6NHG4 134 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 AVILO75366 819 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 SEC31AO94979 1220 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MFN2O95140 757 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ALDOAP04075 364 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PLA2G4BP0C869 781 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CDH2P19022 906 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CCNCP24863 283 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MECP2P51608 486 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 NLRP12P59046 1061 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF445P59923 1031 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ADCK5Q3MIX3 580 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TRIQKQ629K1 86 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 USP17L1Q7RTZ2 530 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TUBGCP5Q96RT8 1024 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 GORASP1Q9BQQ3 440 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 RUVBL1Q9Y265 456 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PEX12O00623 359 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TPH1P17752 444 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CDC25BP30305 580 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 RXRGP48443 463 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 GLUD2P49448 558 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ARPP19P56211 112 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 OLR1P78380 273 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 GRSF1Q12849 480 aaKnown RBP eCLIP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CRHR2Q13324 411 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 KRT31Q15323 416 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 DCAF4L1Q3SXM0 396 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 SLFNL1Q499Z3 407 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MDH1BQ5I0G3 518 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 RSBN1Q5VWQ0 802 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TTI2Q6NXR4 508 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 C16orf89Q6UX73 402 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 HORMAD2Q8N7B1 307 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 SEC14L1Q92503 715 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 FAM129BQ96TA1 746 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 GPR20Q99678 358 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 DESI2Q9BSY9 194 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MRPL39Q9NYK5 338 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ANGEL1Q9UNK9 670 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PRELID1Q9Y255 219 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PLA2R1Q13018 1463 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 SHROOM2Q13796 1616 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CASZ1Q86V15 1759 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 DEXIO95424 95 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 FGAP02671 866 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CKBP12277 381 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 SOX6P35712 828 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ARL3P36405 182 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CAMK2GQ13555 558 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 LRRC32Q14392 662 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 METTL21CQ5VZV1 264 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 KLHL17Q6TDP4 642 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TTC8Q8TAM2 541 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PROX1Q92786 737 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 GPKOWQ92917 476 aaPredicted RBP eCLIP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TMCO6Q96DC7 493 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ARL5BQ96KC2 179 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 RBBP8Q99708 897 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 BBS2Q9BXC9 721 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ACE2Q9BYF1 805 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 SPTLC3Q9NUV7 552 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MAPRE3Q9UPY8 281 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PCDHB15Q9Y5E8 787 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 STON1Q9Y6Q2 735 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 JMJD1CQ15652 2540 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PIPSLA2A3N6 862 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 NFIBO00712 420 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MGRN1O60291 552 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 SKAP2O75563 359 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MNDAP41218 407 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MCCD1P59942 119 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 YWHAZP63104 245 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TUBA1BP68363 451 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 DSG1Q02413 1049 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 DBPQ10586 325 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 KIF19Q2TAC6 998 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TYW1BQ6NUM6 668 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TUBA1AQ71U36 451 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 NME9Q86XW9 330 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 C19orf18Q8NEA5 215 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 RFT1Q96AA3 541 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 GPRASP2Q96D09 838 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms