RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 STMN4Q9H169 189 aaPredicted RBP19.33■□□□□ 0.68
CLN3-263ENST00000637871 USTQ9Y2C2 406 aa19.33■□□□□ 0.68
CLN3-263ENST00000637871 PDE4DIPQ5VU43 2346 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 RPLP2P05387 115 aaKnown RBP19.32■□□□□ 0.68
CLN3-263ENST00000637871 HOXA11P31270 313 aaPredicted RBP19.32■□□□□ 0.68
CLN3-263ENST00000637871 PSMC1P62191 440 aaKnown RBP19.32■□□□□ 0.68
CLN3-263ENST00000637871 RPL7AP62424 266 aaKnown RBP19.32■□□□□ 0.68
CLN3-263ENST00000637871 KRT17Q04695 432 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 ZNF844Q08AG5 666 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 IFFO1Q0D2I5 559 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 ZBTB6Q15916 424 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 C2CD6Q53TS8 623 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 SCARA3Q6AZY7 606 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 ZNF365Q70YC5 407 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 PHLDB2Q86SQ0 1253 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 TTC13Q8NBP0 860 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 MCRS1Q96EZ8 462 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 ELOVL4Q9GZR5 314 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 SDCBP2Q9H190 292 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 SYNCQ9H7C4 482 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 UBQLN1Q9UMX0 589 aaKnown RBP19.32■□□□□ 0.68
CLN3-263ENST00000637871 ATP8A1Q9Y2Q0 1164 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 NR2E3Q9Y5X4 410 aa19.32■□□□□ 0.68
CLN3-263ENST00000637871 RANBP2P49792 3224 aaKnown RBP19.31■□□□□ 0.68
CLN3-263ENST00000637871 O00370 1275 aa19.31■□□□□ 0.68
CLN3-263ENST00000637871 MEFVO15553 781 aaPredicted RBP19.31■□□□□ 0.68
CLN3-263ENST00000637871 FAM163BP0C2L3 166 aa19.31■□□□□ 0.68
CLN3-263ENST00000637871 NR1D1P20393 614 aa19.31■□□□□ 0.68
CLN3-263ENST00000637871 FLT3P36888 993 aa19.31■□□□□ 0.68
CLN3-263ENST00000637871 ZSCAN26Q16670 478 aa19.31■□□□□ 0.68
CLN3-263ENST00000637871 PTPN20Q4JDL3 420 aa19.31■□□□□ 0.68
CLN3-263ENST00000637871 C1orf54Q8WWF1 131 aa19.31■□□□□ 0.68
CLN3-263ENST00000637871 SNX27Q96L92 541 aa19.31■□□□□ 0.68
CLN3-263ENST00000637871 HEXIM2Q96MH2 286 aaKnown RBP19.31■□□□□ 0.68
CLN3-263ENST00000637871 SLITRK1Q96PX8 696 aa19.31■□□□□ 0.68
CLN3-263ENST00000637871 TRAIPQ9BWF2 469 aa19.31■□□□□ 0.68
CLN3-263ENST00000637871 ROPN1BQ9BZX4 212 aaPredicted RBP19.31■□□□□ 0.68
CLN3-263ENST00000637871 SMYD3Q9H7B4 428 aa19.31■□□□□ 0.68
CLN3-263ENST00000637871 ROPN1Q9HAT0 212 aaPredicted RBP19.31■□□□□ 0.68
CLN3-263ENST00000637871 CNTN3Q9P232 1028 aa19.31■□□□□ 0.68
CLN3-263ENST00000637871 ASIC3Q9UHC3 531 aa19.31■□□□□ 0.68
CLN3-263ENST00000637871 MICAL2O94851 1124 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 NPTXRO95502 500 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 KRT1P04264 644 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 ATF2P15336 505 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 DESP17661 470 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 PSMA2P25787 234 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 PNPLA4P41247 253 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 CDH8P55286 799 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 ADCY2Q08462 1091 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 TFDP3Q5H9I0 405 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 C6orf118Q5T5N4 469 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 LLGL2Q6P1M3 1020 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 SPOCD1Q6ZMY3 1216 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 TMEM199Q8N511 208 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 ASNSD1Q9NWL6 643 aa19.3■□□□□ 0.68
CLN3-263ENST00000637871 RNF8O76064 485 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 GPD2P43304 727 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 MAGEA10P43363 369 aaPredicted RBP19.29■□□□□ 0.68
CLN3-263ENST00000637871 RAP1GAPP47736 663 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 KCNJ1P48048 391 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 MLLT1Q03111 559 aaPredicted RBP19.29■□□□□ 0.68
CLN3-263ENST00000637871 FPGSQ05932 587 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 BYSLQ13895 437 aaKnown RBP19.29■□□□□ 0.68
CLN3-263ENST00000637871 ALKAL1Q6UXT8 129 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 XYLT1Q86Y38 959 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 STK32AQ8WU08 396 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 TRIM6Q9C030 488 aaPredicted RBP19.29■□□□□ 0.68
CLN3-263ENST00000637871 CHST7Q9NS84 486 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 PADI3Q9ULW8 664 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 LAMA2P24043 3122 aaKnown RBP19.29■□□□□ 0.68
CLN3-263ENST00000637871 CYP3A5P20815 502 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 SSTR3P32745 418 aaPredicted RBP19.29■□□□□ 0.68
CLN3-263ENST00000637871 RDXP35241 583 aaKnown RBP19.29■□□□□ 0.68
CLN3-263ENST00000637871 PCK1P35558 622 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 IRAK1P51617 712 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 ZNF252P-AS1Q0IIN9 211 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 ZFYVE27Q5T4F4 411 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 C16orf59Q7L2K0 433 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 ZDHHC17Q8IUH5 632 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 RELL1Q8IUW5 271 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 DBF4BQ8NFT6 615 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 PGM2Q96G03 612 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 ZNF560Q96MR9 790 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 CNOT10Q9H9A5 744 aaKnown RBP19.29■□□□□ 0.68
CLN3-263ENST00000637871 CYLDQ9NQC7 956 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 ST3GAL5Q9UNP4 418 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 NEU2Q9Y3R4 380 aa19.29■□□□□ 0.68
CLN3-263ENST00000637871 F8VP50 259 aa19.28■□□□□ 0.68
CLN3-263ENST00000637871 M0QYV0 167 aa19.28■□□□□ 0.68
CLN3-263ENST00000637871 CXCL10P02778 98 aa19.28■□□□□ 0.68
CLN3-263ENST00000637871 NDST1P52848 882 aa19.28■□□□□ 0.68
CLN3-263ENST00000637871 PDCLQ13371 301 aa19.28■□□□□ 0.68
CLN3-263ENST00000637871 KRT71Q3SY84 523 aa19.28■□□□□ 0.68
CLN3-263ENST00000637871 XKR4Q5GH76 650 aa19.28■□□□□ 0.68
CLN3-263ENST00000637871 RHBDF2Q6PJF5 856 aa19.28■□□□□ 0.68
CLN3-263ENST00000637871 NKD2Q969F2 451 aaPredicted RBP19.28■□□□□ 0.68
CLN3-263ENST00000637871 CCDC114Q96M63 670 aa19.28■□□□□ 0.68
CLN3-263ENST00000637871 LBHD1Q9BQE6 289 aaPredicted RBP19.28■□□□□ 0.68
CLN3-263ENST00000637871 hCG_1818297A0A087WSY0 165 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms