RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 SLC9A7Q96T83 725 aa12.4□□□□□ -0.42
CLN6-223ENST00000637823 SMOQ99835 787 aa12.4□□□□□ -0.42
CLN6-223ENST00000637823 ZBED2Q9BTP6 218 aa12.4□□□□□ -0.42
CLN6-223ENST00000637823 MTIF3Q9H2K0 278 aaKnown RBP12.4□□□□□ -0.42
CLN6-223ENST00000637823 CSNK1G1Q9HCP0 422 aa12.4□□□□□ -0.42
CLN6-223ENST00000637823 KRT82Q9NSB4 513 aa12.4□□□□□ -0.42
CLN6-223ENST00000637823 TMLHEQ9NVH6 421 aa12.4□□□□□ -0.42
CLN6-223ENST00000637823 TJP2Q9UDY2 1190 aa12.4□□□□□ -0.42
CLN6-223ENST00000637823 IP6K2Q9UHH9 426 aa12.4□□□□□ -0.42
CLN6-223ENST00000637823 CDC23Q9UJX2 597 aa12.4□□□□□ -0.42
CLN6-223ENST00000637823 ZMYND8Q9ULU4 1186 aaPredicted RBP12.4□□□□□ -0.42
CLN6-223ENST00000637823 SNX12Q9UMY4 172 aa12.4□□□□□ -0.42
CLN6-223ENST00000637823 HYOU1Q9Y4L1 999 aa12.4□□□□□ -0.42
CLN6-223ENST00000637823 MIF4GDA9UHW6 222 aaKnown RBP12.39□□□□□ -0.43
CLN6-223ENST00000637823 NCK2O43639 380 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 BEST1O76090 585 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 COMTP21964 271 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 MAN1A1P33908 653 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 PPM1AP35813 382 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 MAP3K7CLP57077 242 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 RPL7AP62424 266 aaKnown RBP12.39□□□□□ -0.43
CLN6-223ENST00000637823 PIGHQ14442 188 aaPredicted RBP12.39□□□□□ -0.43
CLN6-223ENST00000637823 SLC39A12Q504Y0 691 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 FAM183BPQ6ZVS7 135 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 DDX53Q86TM3 631 aaKnown RBP12.39□□□□□ -0.43
CLN6-223ENST00000637823 PIGZQ86VD9 579 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 TMEM173Q86WV6 379 aaPredicted RBP12.39□□□□□ -0.43
CLN6-223ENST00000637823 HERC6Q8IVU3 1022 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 SCUBE3Q8IX30 993 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 RNF168Q8IYW5 571 aaPredicted RBP12.39□□□□□ -0.43
CLN6-223ENST00000637823 FIBCD1Q8N539 461 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 TMEM169Q96HH4 297 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 FUBP3Q96I24 572 aaKnown RBP eCLIP12.39□□□□□ -0.43
CLN6-223ENST00000637823 OSBPL9Q96SU4 736 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 RAD9AQ99638 391 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 GOLPH3Q9H4A6 298 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 CHST7Q9NS84 486 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 CXXC1Q9P0U4 656 aaPredicted RBP12.39□□□□□ -0.43
CLN6-223ENST00000637823 STK39Q9UEW8 545 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 PCDHB12Q9Y5F1 795 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 MRFAP1Q9Y605 127 aa12.39□□□□□ -0.43
CLN6-223ENST00000637823 ZNF638Q14966 1978 aaKnown RBP12.38□□□□□ -0.43
CLN6-223ENST00000637823 PIK3R2O00459 728 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 CES2O00748 559 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 PAPSS1O43252 624 aaPredicted RBP12.38□□□□□ -0.43
CLN6-223ENST00000637823 SPOPO43791 374 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 FBXO21O94952 628 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 GJB6O95452 261 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 SOD2P04179 222 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 LCP1P13796 627 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 BDNFP23560 247 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 RFC1P35251 1148 aaPredicted RBP12.38□□□□□ -0.43
CLN6-223ENST00000637823 ACAP1Q15027 740 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 WHAMMP3Q1A5X7 153 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 RAB41Q5JT25 222 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 EFHC1Q5JVL4 640 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 RTP2Q5QGT7 225 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 FAM102AQ5T9C2 384 aaPredicted RBP12.38□□□□□ -0.43
CLN6-223ENST00000637823 ARCQ7LC44 396 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 UBL4BQ8N7F7 174 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 NIPA2Q8N8Q9 360 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 ZMIZ2Q8NF64 920 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.38□□□□□ -0.43
CLN6-223ENST00000637823 FNIP1Q8TF40 1166 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 C2orf15Q8WU43 125 aaKnown RBP12.38□□□□□ -0.43
CLN6-223ENST00000637823 PIK3R5Q8WYR1 880 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 PBKQ96KB5 322 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 B3GALT6Q96L58 329 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 MCEEQ96PE7 176 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 HERC2P3Q9BVR0 1158 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 VN1R3Q9BXE9 311 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 TRIM7Q9C029 511 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 LRRC4Q9HBW1 653 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 PNPLA8Q9NP80 782 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 DMAP1Q9NPF5 467 aaPredicted RBP12.38□□□□□ -0.43
CLN6-223ENST00000637823 METTL5Q9NRN9 209 aaKnown RBP12.38□□□□□ -0.43
CLN6-223ENST00000637823 PCDH10Q9P2E7 1040 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 PACSIN2Q9UNF0 486 aaPredicted RBP12.38□□□□□ -0.43
CLN6-223ENST00000637823 PCDHB5Q9Y5E4 795 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 NR2E3Q9Y5X4 410 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 BACE2Q9Y5Z0 518 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 GREB1Q4ZG55 1949 aa12.38□□□□□ -0.43
CLN6-223ENST00000637823 CCDC66A2RUB6 948 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 CCDC85CA6NKD9 419 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 HHLA1C9JL84 531 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 RIOK3O14730 519 aaKnown RBP12.37□□□□□ -0.43
CLN6-223ENST00000637823 OR4Q2P0C623 313 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 ATP2A2P16615 1042 aaKnown RBP12.37□□□□□ -0.43
CLN6-223ENST00000637823 CTNNA2P26232 953 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 MAGEA11P43364 429 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 TKTL1P51854 596 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 CACNA2D1P54289 1103 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 DSG1Q02413 1049 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 KRT17Q04695 432 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 GPR17Q13304 367 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 PSMD5Q16401 504 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 CFAP221Q4G0U5 840 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 RASIP1Q5U651 963 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 KIAA1841Q6NSI8 718 aa12.37□□□□□ -0.43
CLN6-223ENST00000637823 OLFML1Q6UWY5 402 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms