RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 NME8Q8N427 588 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 GIPC2Q8TF65 315 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 FAM172AQ8WUF8 416 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 OSBPL8Q9BZF1 889 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 NAALADL1Q9UQQ1 740 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 BRWD1Q9NSI6 2320 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 TBKBP1A7MCY6 615 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 HAS3O00219 553 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 MSI1O43347 362 aaKnown RBP11.07□□□□□ -0.64
VPS11-208ENST00000621676 NCAM1P13591 858 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 GPD2P43304 727 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 IFFO1Q0D2I5 559 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 TRIM60Q495X7 471 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 CEP85LQ5SZL2 805 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 ZNF771Q7L3S4 317 aaPredicted RBP11.07□□□□□ -0.64
VPS11-208ENST00000621676 SERINC5Q86VE9 423 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 PCSK9Q8NBP7 692 aaKnown RBP11.07□□□□□ -0.64
VPS11-208ENST00000621676 CCNYQ8ND76 341 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 PCED1BQ96HM7 432 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 SEPT5Q99719 369 aaPredicted RBP11.07□□□□□ -0.64
VPS11-208ENST00000621676 TRIM56Q9BRZ2 755 aaKnown RBP11.07□□□□□ -0.64
VPS11-208ENST00000621676 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.07□□□□□ -0.64
VPS11-208ENST00000621676 TMLHEQ9NVH6 421 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 SFMBT1Q9UHJ3 866 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 UTP11Q9Y3A2 253 aaKnown RBP11.07□□□□□ -0.64
VPS11-208ENST00000621676 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.07□□□□□ -0.64
VPS11-208ENST00000621676 GPR182O15218 404 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 PAPSS1O43252 624 aaPredicted RBP11.07□□□□□ -0.64
VPS11-208ENST00000621676 GABBR2O75899 941 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 CENPCQ03188 943 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 SURF1Q15526 300 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 UAP1Q16222 522 aaPredicted RBP11.07□□□□□ -0.64
VPS11-208ENST00000621676 LHX8Q68G74 356 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 PRSS55Q6UWB4 352 aaPredicted RBP11.07□□□□□ -0.64
VPS11-208ENST00000621676 ENOSF1Q7L5Y1 443 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 LRRTM3Q86VH5 581 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 SLC13A5Q86YT5 568 aaPredicted RBP11.07□□□□□ -0.64
VPS11-208ENST00000621676 ANKMY2Q8IV38 441 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 SPNS2Q8IVW8 549 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 SIX6OS1Q8N1H7 587 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 SLC7A14Q8TBB6 771 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 ARL8AQ96BM9 186 aa11.07□□□□□ -0.64
VPS11-208ENST00000621676 MAK16Q9BXY0 300 aaKnown RBP11.07□□□□□ -0.64
VPS11-208ENST00000621676 H7C0C1 242 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 ATP5OP48047 213 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 YWHAEP62258 255 aaKnown RBP11.06□□□□□ -0.64
VPS11-208ENST00000621676 MTMR3Q13615 1198 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 SLC39A12Q504Y0 691 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 ARFGAP1Q8N6T3 406 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 FAM71DQ8N9W8 422 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 B3GALNT2Q8NCR0 500 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 MGARPQ8TDB4 240 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 KBTBD7Q8WVZ9 684 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 AGAP3Q96P47 875 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 MRPL47Q9HD33 250 aaKnown RBP11.06□□□□□ -0.64
VPS11-208ENST00000621676 SCN4AP35499 1836 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 TRDMT1O14717 391 aaKnown RBP11.06□□□□□ -0.64
VPS11-208ENST00000621676 NRP1O14786 923 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 LRCH4O75427 683 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 TUBB4AP04350 444 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 CYP1A1P04798 512 aaPredicted RBP11.06□□□□□ -0.64
VPS11-208ENST00000621676 TKTL1P51854 596 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 BASP1P80723 227 aaKnown RBP11.06□□□□□ -0.64
VPS11-208ENST00000621676 KRT17Q04695 432 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 DCAF4L1Q3SXM0 396 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 GLB1LQ6UWU2 654 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 ZNF365Q70YC5 407 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 JAMLQ86YT9 394 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 DEFB106AQ8N104 65 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 ULBP1Q9BZM6 244 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 UBP1Q9NZI7 540 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS11-208ENST00000621676 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS11-208ENST00000621676 E2F8A0AVK6 867 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 MAPK13O15264 365 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 CCL5P13501 91 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 CPB1P15086 417 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 PTPN1P18031 435 aaKnown RBP11.06□□□□□ -0.64
VPS11-208ENST00000621676 SP100P23497 879 aaPredicted RBP11.06□□□□□ -0.64
VPS11-208ENST00000621676 CLDN10P78369 228 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 OLIG2Q13516 323 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 TCTN1Q2MV58 587 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 RWDD4Q6NW29 188 aaKnown RBP11.06□□□□□ -0.64
VPS11-208ENST00000621676 XYLT1Q86Y38 959 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 KRT222Q8N1A0 295 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 USP33Q8TEY7 942 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 CELF6Q96J87 481 aaKnown RBP11.06□□□□□ -0.64
VPS11-208ENST00000621676 HIPK3Q9H422 1215 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 ITGA11Q9UKX5 1188 aa11.06□□□□□ -0.64
VPS11-208ENST00000621676 VPS13AQ96RL7 3174 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 GOLGA6BA6NDN3 693 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 M0QYT0 321 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 PRPSAP2O60256 369 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 PROSCO94903 275 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 CYP1A2P05177 515 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 PEX5P50542 639 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 MGAT5BQ3V5L5 792 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 MICALCLQ6ZW33 695 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 TAS1R1Q7RTX1 841 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 SPRED2Q7Z698 418 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms