RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 KCNK12Q9HB15 430 aa14.31□□□□□ -0.12
LINC00540-202ENST00000616974 ABCB6Q9NP58 842 aa14.31□□□□□ -0.12
LINC00540-202ENST00000616974 LIMA1Q9UHB6 759 aaKnown RBP14.31□□□□□ -0.12
LINC00540-202ENST00000616974 CCL26Q9Y258 94 aa14.31□□□□□ -0.12
LINC00540-202ENST00000616974 C2orf78A6NCI8 922 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 PIK3R2O00459 728 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 TNFRSF10BO14763 440 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 GABBR2O75899 941 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 PRAMEF12O95522 483 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 F11P03951 625 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 FCARP24071 287 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 MAGEA11P43364 429 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 ZNF132P52740 706 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 FAM78AQ5JUQ0 283 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 FAM114A1Q8IWE2 563 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 RBBP8NLQ8NC74 664 aaPredicted RBP14.3□□□□□ -0.12
LINC00540-202ENST00000616974 RNF214Q8ND24 703 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 UBA3Q8TBC4 463 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 LSM14BQ9BX40 385 aaKnown RBP14.3□□□□□ -0.12
LINC00540-202ENST00000616974 ATXN3LQ9H3M9 355 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 APEX2Q9UBZ4 518 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 PRKAG3Q9UGI9 489 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 NUMBLQ9Y6R0 609 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 DLL1O00548 723 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 FAM163BP0C2L3 166 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 CD19P15391 556 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 SLC5A3P53794 718 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 ZXDBP98169 803 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 GCNT1Q02742 428 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 TANGO2Q6ICL3 276 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 ELMSAN1Q6PJG2 1045 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 HNRNPABQ99729 332 aaKnown RBP14.3□□□□□ -0.12
LINC00540-202ENST00000616974 BPIFA3Q9BQP9 254 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 FAM207AQ9NSI2 230 aaPredicted RBP14.3□□□□□ -0.12
LINC00540-202ENST00000616974 HSFX1Q9UBD0 423 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 TSPAN16Q9UKR8 245 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 CDH7Q9ULB5 785 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 FAM50BQ9Y247 325 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 SIK3Q9Y2K2 1263 aa14.3□□□□□ -0.12
LINC00540-202ENST00000616974 CACNA1IQ9P0X4 2223 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 FOXN3O00409 490 aaPredicted RBP14.29□□□□□ -0.12
LINC00540-202ENST00000616974 SCAMP3O14828 347 aaKnown RBP14.29□□□□□ -0.12
LINC00540-202ENST00000616974 POU2F2P09086 479 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 DENND5BQ6ZUT9 1274 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 ELMOD1Q8N336 334 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 SLC46A2Q9BY10 475 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 SLITRK6Q9H5Y7 841 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 CHORDC1Q9UHD1 332 aaPredicted RBP14.29□□□□□ -0.12
LINC00540-202ENST00000616974 DNAJC12Q9UKB3 198 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 GTPBP10A4D1E9 387 aaKnown RBP14.29□□□□□ -0.12
LINC00540-202ENST00000616974 KRT5P13647 590 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 USP8P40818 1118 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 SMARCB1Q12824 385 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 HTR4Q13639 388 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 SYCP1Q15431 976 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 MAPRE1Q15691 268 aaKnown RBP14.29□□□□□ -0.12
LINC00540-202ENST00000616974 GOLGA7BQ2TAP0 167 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 SKOR2Q2VWA4 1001 aaPredicted RBP14.29□□□□□ -0.12
LINC00540-202ENST00000616974 CYP4A22Q5TCH4 519 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 KLHDC7AQ5VTJ3 777 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 VSTM1Q6UX27 236 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 OTOP3Q7RTS5 596 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 MAB21L3Q8N8X9 362 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 SMARCD1Q96GM5 515 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 GANQ9H2C0 597 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 CSNK1G1Q9HCP0 422 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 OSER1Q9NX31 292 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 TJP2Q9UDY2 1190 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 MAFFQ9ULX9 164 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 USTQ9Y2C2 406 aa14.29□□□□□ -0.12
LINC00540-202ENST00000616974 LAMA1P25391 3075 aa14.28□□□□□ -0.12
LINC00540-202ENST00000616974 FAM86C2PA6NEL3 165 aa14.28□□□□□ -0.12
LINC00540-202ENST00000616974 O00370 1275 aa14.28□□□□□ -0.12
LINC00540-202ENST00000616974 CDK11BP21127 795 aaKnown RBP14.28□□□□□ -0.12
LINC00540-202ENST00000616974 TBXAS1P24557 533 aaPredicted RBP14.28□□□□□ -0.12
LINC00540-202ENST00000616974 PDE4CQ08493 712 aa14.28□□□□□ -0.12
LINC00540-202ENST00000616974 CETN1Q12798 172 aa14.28□□□□□ -0.12
LINC00540-202ENST00000616974 TAF10Q12962 218 aa14.28□□□□□ -0.12
LINC00540-202ENST00000616974 RAPGEF1Q13905 1077 aa14.28□□□□□ -0.12
LINC00540-202ENST00000616974 GPR158Q5T848 1215 aa14.28□□□□□ -0.12
LINC00540-202ENST00000616974 TTC16Q8NEE8 873 aa14.28□□□□□ -0.12
LINC00540-202ENST00000616974 ZSCAN18Q8TBC5 510 aaPredicted RBP14.28□□□□□ -0.12
LINC00540-202ENST00000616974 C8orf48Q96LL4 319 aa14.28□□□□□ -0.12
LINC00540-202ENST00000616974 NAA15Q9BXJ9 866 aaKnown RBP14.28□□□□□ -0.12
LINC00540-202ENST00000616974 DMAP1Q9NPF5 467 aaPredicted RBP14.28□□□□□ -0.12
LINC00540-202ENST00000616974 NLRC4Q9NPP4 1024 aa14.28□□□□□ -0.12
LINC00540-202ENST00000616974 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.28□□□□□ -0.12
LINC00540-202ENST00000616974 EPS15L1Q9UBC2 864 aa14.28□□□□□ -0.12
LINC00540-202ENST00000616974 CYTH4Q9UIA0 394 aa14.28□□□□□ -0.12
LINC00540-202ENST00000616974 NUDT5Q9UKK9 219 aa14.28□□□□□ -0.12
LINC00540-202ENST00000616974 MIA3Q5JRA6 1907 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 LRRC10BA6NIK2 292 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 LGALS16A8MUM7 142 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 CYP26A1O43174 497 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 FAM200BP0CF97 657 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 UCHL3P15374 230 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 CLCN1P35523 988 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 RPL10AP62906 217 aaKnown RBP14.27□□□□□ -0.12
LINC00540-202ENST00000616974 GRM2Q14416 872 aa14.27□□□□□ -0.12
LINC00540-202ENST00000616974 VEPH1Q14D04 833 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms