RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 CFAP221Q4G0U5 840 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 C2CD6Q53TS8 623 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 MIIPQ5JXC2 388 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 CYP4A22Q5TCH4 519 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 DPY19L2P1Q6NXN4 242 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 PDXDC1Q6P996 788 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 CLEC20AQ6ZU45 233 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 FBXL13Q8NEE6 735 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 HDAC7Q8WUI4 952 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 BHMTQ93088 406 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 MED10Q9BTT4 135 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 PLCB1Q9NQ66 1216 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 MAGEC2Q9UBF1 373 aaPredicted RBP6.06□□□□□ -1.44
CPNE3-208ENST00000614678 STK39Q9UEW8 545 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 CDH9Q9ULB4 789 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 R3HCC1Q9Y3T6 440 aaKnown RBP6.06□□□□□ -1.44
CPNE3-208ENST00000614678 WNT6Q9Y6F9 365 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 AP1G2O75843 785 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 COL4A2P08572 1712 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 ACO1P21399 889 aaKnown RBP6.05□□□□□ -1.44
CPNE3-208ENST00000614678 BRD2P25440 801 aaKnown RBP6.05□□□□□ -1.44
CPNE3-208ENST00000614678 TCF15Q12870 199 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 FZD5Q13467 585 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 GAS6Q14393 721 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 Q6ZS52 159 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 DNAAF5Q86Y56 855 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 TMEM86AQ8N2M4 240 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 PPM1KQ8N3J5 372 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 CCDC47Q96A33 483 aaKnown RBP6.05□□□□□ -1.44
CPNE3-208ENST00000614678 SYAP1Q96A49 352 aaPredicted RBP6.05□□□□□ -1.44
CPNE3-208ENST00000614678 CYFIP2Q96F07 1278 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 DHTKD1Q96HY7 919 aaPredicted RBP6.05□□□□□ -1.44
CPNE3-208ENST00000614678 PIWIL1Q96J94 861 aaKnown RBP6.05□□□□□ -1.44
CPNE3-208ENST00000614678 VRTNQ9H8Y1 702 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 GMIPQ9P107 970 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 FBXL21Q9UKT6 434 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 DSEQ9UL01 958 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 NDRG2Q9UN36 371 aaKnown RBP6.05□□□□□ -1.44
CPNE3-208ENST00000614678 FRYQ5TBA9 3013 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 BECN2A8MW95 431 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 ALADP13716 330 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 RPL13P26373 211 aaKnown RBP6.05□□□□□ -1.44
CPNE3-208ENST00000614678 RGS7P49802 495 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 SNRPFP62306 86 aaKnown RBP6.05□□□□□ -1.44
CPNE3-208ENST00000614678 COBLL1Q53SF7 1204 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 TMEM270Q6UE05 265 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 DCP1BQ8IZD4 617 aaKnown RBP6.05□□□□□ -1.44
CPNE3-208ENST00000614678 SPPL2BQ8TCT7 592 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 NIF3L1Q9GZT8 377 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 FANCLQ9NW38 375 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 CYTH4Q9UIA0 394 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 FAM186AA6NE01 2351 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 MIA3Q5JRA6 1907 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 LRRC63Q05C16 580 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 KCNMA1Q12791 1236 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 SURF1Q15526 300 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 CMTM8Q8IZV2 173 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 EZH1Q92800 747 aaPredicted RBP6.05□□□□□ -1.44
CPNE3-208ENST00000614678 SMARCD2Q92925 531 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 HEXIM2Q96MH2 286 aaKnown RBP6.05□□□□□ -1.44
CPNE3-208ENST00000614678 HPS4Q9NQG7 708 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 TAB2Q9NYJ8 693 aa6.05□□□□□ -1.44
CPNE3-208ENST00000614678 CGNQ9P2M7 1197 aaKnown RBP6.05□□□□□ -1.44
CPNE3-208ENST00000614678 CARNS1A5YM72 827 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 IRF1P10914 325 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 TARSP26639 723 aaKnown RBP6.04□□□□□ -1.44
CPNE3-208ENST00000614678 PCSK1P29120 753 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 AVPR2P30518 371 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 ARHGAP44Q17R89 818 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 DENND5BQ6ZUT9 1274 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 FILIP1Q7Z7B0 1213 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 TBC1D17Q9HA65 648 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 ZFP14Q9HCL3 533 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 SIX2Q9NPC8 291 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 ZNF840PA6NDX5 716 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 PRR33A8MZF0 331 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 USP17L7P0C7H9 530 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 TUFMP49411 452 aaKnown RBP6.04□□□□□ -1.44
CPNE3-208ENST00000614678 INCA1Q0VD86 236 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 CUL2Q13617 745 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 TAF12Q16514 161 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 SLC44A4Q53GD3 710 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 TPRG1Q6ZUI0 275 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 C12orf40Q86WS4 652 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 UBR7Q8N806 425 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 TSPAN18Q96SJ8 248 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 TSG101Q99816 390 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 VPS16Q9H269 839 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 RWDD2AQ9UIY3 292 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 COQ4Q9Y3A0 265 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 NFE2L3Q9Y4A8 694 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 CEP250Q9BV73 2442 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 FSD2A1L4K1 749 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 SRFP11831 508 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 ATICP31939 592 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 PXNP49023 591 aaPredicted RBP6.04□□□□□ -1.44
CPNE3-208ENST00000614678 PITX1P78337 314 aaPredicted RBP6.04□□□□□ -1.44
CPNE3-208ENST00000614678 UBXN2BQ14CS0 331 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 NCAPHQ15003 741 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 TAF5Q15542 800 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms