RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 HSPA4LO95757 839 aa13.09□□□□□ -0.31
MSH6-213ENST00000614496 CST3P01034 146 aaPredicted RBP13.09□□□□□ -0.31
MSH6-213ENST00000614496 RFC5P40937 340 aa13.09□□□□□ -0.31
MSH6-213ENST00000614496 SNX16P57768 344 aa13.09□□□□□ -0.31
MSH6-213ENST00000614496 IRX1P78414 480 aaPredicted RBP13.09□□□□□ -0.31
MSH6-213ENST00000614496 GAD2Q05329 585 aa13.09□□□□□ -0.31
MSH6-213ENST00000614496 UNC45BQ8IWX7 931 aa13.09□□□□□ -0.31
MSH6-213ENST00000614496 SAMD3Q8N6K7 520 aa13.09□□□□□ -0.31
MSH6-213ENST00000614496 RDM1Q8NG50 284 aa13.09□□□□□ -0.31
MSH6-213ENST00000614496 AGAP3Q96P47 875 aa13.09□□□□□ -0.31
MSH6-213ENST00000614496 PPCSQ9HAB8 311 aa13.09□□□□□ -0.31
MSH6-213ENST00000614496 APOBEC3GQ9HC16 384 aaKnown RBP13.09□□□□□ -0.31
MSH6-213ENST00000614496 USP18Q9UMW8 372 aa13.09□□□□□ -0.31
MSH6-213ENST00000614496 NENFQ9UMX5 172 aa13.09□□□□□ -0.31
MSH6-213ENST00000614496 MAFGO15525 162 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 DHX15O43143 795 aaKnown RBP13.08□□□□□ -0.32
MSH6-213ENST00000614496 TYK2P29597 1187 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 SIX1Q15475 284 aaPredicted RBP13.08□□□□□ -0.32
MSH6-213ENST00000614496 TTC39BQ5VTQ0 682 aaPredicted RBP13.08□□□□□ -0.32
MSH6-213ENST00000614496 HEATR6Q6AI08 1181 aaKnown RBP13.08□□□□□ -0.32
MSH6-213ENST00000614496 ZNF280CQ8ND82 737 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 JOSD2Q8TAC2 188 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 RAB3IL1Q8TBN0 382 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 PIP4K2CQ8TBX8 421 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 SCG3Q8WXD2 468 aaKnown RBP13.08□□□□□ -0.32
MSH6-213ENST00000614496 CLMNQ96JQ2 1002 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 SYT11Q9BT88 431 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 ARL8BQ9NVJ2 186 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 NKX1-2Q9UD57 310 aaPredicted RBP13.08□□□□□ -0.32
MSH6-213ENST00000614496 VWA5AO00534 786 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 ALOX15BO15296 676 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 GNAT1P11488 350 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 EFNA5P52803 228 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 HIC1Q14526 733 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 SLC45A4Q5BKX6 768 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 MECRQ9BV79 373 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 DENND2DQ9H6A0 471 aaPredicted RBP13.08□□□□□ -0.32
MSH6-213ENST00000614496 YDJCA8MPS7 323 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 MEI4A8MW99 385 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 WNT10BO00744 389 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 OGTO15294 1046 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 CREB3O43889 395 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 ASMTLO95671 621 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 ADORA2BP29275 332 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 MIPP30301 263 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 CNTN2Q02246 1040 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 CUL3Q13618 768 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 NBPF12Q5TAG4 269 aaPredicted RBP13.08□□□□□ -0.32
MSH6-213ENST00000614496 VSIG10LQ86VR7 867 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 POU5F2Q8N7G0 328 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 INPP5DQ92835 1189 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 SRPK1Q96SB4 655 aaKnown RBP13.08□□□□□ -0.32
MSH6-213ENST00000614496 DEFB129Q9H1M3 183 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 HOXC10Q9NYD6 342 aa13.08□□□□□ -0.32
MSH6-213ENST00000614496 DDX60Q8IY21 1712 aaKnown RBP13.07□□□□□ -0.32
MSH6-213ENST00000614496 TMEM191CA6NGB0 347 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 ABHD2P08910 425 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 AP3M2P53677 418 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 AP1B1Q10567 949 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 MAP7D1Q3KQU3 841 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 WASHC2DQ5SRD0 308 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 FNBP1LQ5T0N5 605 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 ATF7IP2Q5U623 682 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.07□□□□□ -0.322e-7■■■■□ 25.1
MSH6-213ENST00000614496 GPD1P21695 349 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 TCF7P36402 384 aaPredicted RBP13.07□□□□□ -0.32
MSH6-213ENST00000614496 GARSP41250 739 aaKnown RBP13.07□□□□□ -0.32
MSH6-213ENST00000614496 PHF13Q86YI8 300 aaPredicted RBP13.07□□□□□ -0.32
MSH6-213ENST00000614496 TRAPPC12Q8WVT3 735 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 CLEC4DQ8WXI8 215 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 PAK5Q9P286 719 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 LGALS13Q9UHV8 139 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 COQ4Q9Y3A0 265 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 TM9SF1O15321 606 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 FAM155BO75949 473 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 CXCL8P10145 99 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 LCP1P13796 627 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 KDELR1P24390 212 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 ASPHQ12797 758 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 IFRD2Q12894 506 aaPredicted RBP13.07□□□□□ -0.32
MSH6-213ENST00000614496 GEN1Q17RS7 908 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 PLEKHA7Q6IQ23 1121 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 SLC39A4Q6P5W5 647 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 ISLR2Q6UXK2 745 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 CLNKQ7Z7G1 428 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 RXFP2Q8WXD0 754 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 OXNAD1Q96HP4 312 aaPredicted RBP13.07□□□□□ -0.32
MSH6-213ENST00000614496 ZNF570Q96NI8 536 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 LRMDAQ9H2I8 198 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 WDR35Q9P2L0 1181 aa13.07□□□□□ -0.32
MSH6-213ENST00000614496 NEMP1O14524 444 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 MMP8P22894 467 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 CLCN3P51790 818 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 DPYSL3Q14195 570 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 C15orf59Q2T9L4 293 aaPredicted RBP13.06□□□□□ -0.32
MSH6-213ENST00000614496 THEMIS2Q5TEJ8 643 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 SLC26A11Q86WA9 606 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 SEPT1Q8WYJ6 367 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 DDX1Q92499 740 aaKnown RBP13.06□□□□□ -0.32
MSH6-213ENST00000614496 MED10Q9BTT4 135 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms